Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-22 109.0 60 100.0
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 1.1e-18 95.9 60 96.7
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 5.6e-18 93.6 60 95.0
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 9.5e-18 92.8 60 95.0
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 3.6e-17 90.9 53 98.1
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 1.8e-16 88.6 53 96.2
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 2.3e-16 88.2 53 94.3
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 2.3e-16 88.2 53 94.3
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 2.3e-16 88.2 53 94.3
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 8.9e-16 86.3 53 94.3
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 4.4e-15 84.0 53 88.7
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 4.4e-15 84.0 53 88.7
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 4.4e-15 84.0 53 88.7
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 5.8e-15 83.6 53 88.7
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 5.8e-15 83.6 53 88.7
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 5.8e-15 83.6 53 88.7
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 5.8e-15 83.6 53 88.7
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-15 83.2 53 86.8
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 7.5e-15 83.2 53 86.8
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-15 83.2 53 86.8
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-15 83.2 53 86.8
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-15 83.2 53 86.8
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-15 83.2 53 86.8
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-15 83.2 53 86.8
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-15 83.2 53 86.8
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-15 83.2 53 86.8
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 7.5e-15 83.2 53 86.8
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 9.8e-15 82.8 53 86.8
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 9.8e-15 82.8 53 86.8
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.3e-14 82.4 53 86.8
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 1.3e-14 82.4 53 86.8
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 1.3e-14 82.4 53 86.8
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.3e-14 82.4 53 86.8
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 1.3e-14 82.4 53 86.8
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 1.3e-14 82.4 53 86.8
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 1.3e-14 82.4 53 86.8
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.7e-14 82.0 53 84.9
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.7e-14 82.0 53 84.9
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.7e-14 82.0 53 84.9
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.7e-14 82.0 53 84.9
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 2.2e-14 81.6 53 84.9
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 3.7e-14 80.9 53 83.0
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 3.7e-14 80.9 53 83.0
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 3.7e-14 80.9 53 84.9
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 6.4e-14 80.1 54 81.5
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 8.3e-14 79.7 53 83.0
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 8.3e-14 79.7 53 83.0
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 8.3e-14 79.7 53 83.0
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 8.3e-14 79.7 53 84.9
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 1.9e-13 78.6 53 81.1
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.9e-13 78.6 53 81.1
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.9e-13 78.6 54 77.8
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-13 78.6 53 83.0
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 2.4e-13 78.2 53 84.9
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 2.4e-13 78.2 53 84.9
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.2e-13 77.8 53 83.0
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.2e-13 77.8 53 83.0
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.2e-13 77.8 53 83.0
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 7.1e-13 76.6 53 79.2
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 9.2e-13 76.3 53 83.0
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 9.2e-13 76.3 53 83.0
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 9.2e-13 76.3 53 83.0
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 1.6e-12 75.5 53 79.2
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 2.1e-12 75.1 53 73.6
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 1.0e-11 72.8 57 77.2
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 1.0e-11 72.8 57 77.2
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 1.0e-11 72.8 53 79.2
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.3e-11 72.4 53 79.2
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 2.3e-11 71.6 45 86.7
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 1.1e-10 69.3 57 71.9
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 4.3e-10 67.4 57 73.7
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 9.5e-10 66.2 54 70.4
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 1.8e-08 62.0 44 75.0
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 2.0e-07 58.5 42 69.0
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 1.3e-06 55.8 53 69.8
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 4.9e-06 53.9 53 66.0
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 8.4e-06 53.1 27 100.0


User provided reference genes

Program Settings