Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 8.2e-91 337.0 169 100.0
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-75 286.6 144 99.3
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-75 286.6 144 99.3
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-75 286.6 144 99.3
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-75 286.6 144 99.3
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-75 286.6 144 99.3
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-75 286.6 144 99.3
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-75 286.6 144 99.3
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-75 286.6 144 99.3
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 2.2e-75 285.8 144 98.6
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 2.2e-75 285.8 144 98.6
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 2.2e-75 285.8 144 98.6
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 2.2e-75 285.8 144 98.6
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 2.2e-75 285.8 144 98.6
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 6.3e-75 284.3 144 98.6
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 6.3e-75 284.3 144 98.6
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 3.2e-71 271.9 144 93.8
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.3e-48 196.8 144 71.5
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 2.5e-47 192.6 142 69.7
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 2.5e-47 192.6 142 69.0
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.2e-47 191.8 144 70.1
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.2e-47 191.8 144 70.1
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 5.5e-47 191.4 142 68.3
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-46 189.9 144 69.4
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.6e-46 188.7 144 69.4
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 4.7e-46 188.3 144 69.4
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.0e-45 187.2 144 70.1
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.0e-45 185.3 144 68.8
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.0e-45 185.3 144 68.8
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-44 183.3 139 66.9
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-44 183.3 139 66.9
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-44 183.3 139 66.9
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-44 183.3 139 66.9
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-44 183.3 139 66.9
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 1.7e-43 179.9 146 66.4
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 1.7e-43 179.9 146 66.4
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 2.2e-43 179.5 144 68.1
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 3.1e-42 175.6 142 65.5
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 3.1e-42 175.6 142 65.5
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 3.1e-42 175.6 142 65.5
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 3.1e-42 175.6 142 65.5
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 9.1e-42 174.1 142 64.1
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 4.5e-41 171.8 142 64.1
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 2.9e-40 169.1 146 63.7
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 1.1e-39 167.2 142 62.0
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 1.0e-37 160.6 146 62.3
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 3.0e-37 159.1 142 58.5
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 4.4e-36 155.2 79 92.4
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-35 152.9 127 63.8
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-35 152.9 127 63.8
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-35 152.9 127 63.8
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 2.2e-35 152.9 116 69.0
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 1.8e-34 149.8 78 98.7
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.4e-34 149.4 144 57.6
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 3.1e-34 149.1 139 58.3
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.1e-34 148.7 144 57.6
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 3.5e-33 145.6 139 56.8
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 4.5e-33 145.2 123 62.6
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 6.6e-32 141.4 117 64.1
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 4.3e-31 138.7 144 55.6
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 4.3e-31 138.7 142 54.9
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 6.1e-30 134.8 139 54.0
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.8e-29 133.3 115 61.7
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 3.4e-28 129.0 143 53.1
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 5.8e-28 128.3 142 53.5
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 2.9e-27 125.9 147 49.7
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 3.0e-24 115.9 90 61.1
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 3.9e-24 115.5 142 45.8
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 4.3e-23 112.1 70 72.9
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 4.3e-23 112.1 81 67.9
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.5e-23 110.9 81 66.7
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-22 110.2 60 95.0
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 4.7e-22 108.6 70 70.0
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 4.7e-22 108.6 106 62.3
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 2.3e-21 106.3 149 43.6
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.1e-21 105.9 56 82.1
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.1e-21 105.9 143 44.1
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.1e-18 97.4 53 79.2
BolC2t10610H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-18 96.7 59 89.8
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 2.4e-18 96.3 51 78.4
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.2e-18 94.4 47 85.1
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.2e-17 94.0 61 68.9
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.1e-17 93.2 56 73.2
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 3.5e-17 92.4 83 51.8
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.0e-17 91.7 46 84.8
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.0e-17 91.7 46 84.8
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.0e-17 91.7 46 84.8
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.0e-17 91.7 46 84.8
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.0e-17 91.7 46 84.8
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 6.0e-17 91.7 80 63.8
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 7.8e-17 91.3 99 56.6
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.7e-16 90.1 48 79.2
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.9e-16 89.0 46 80.4
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 8.6e-16 87.8 87 62.1
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-15 87.0 139 39.6
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 1.9e-15 86.7 95 54.7
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 2.1e-14 83.2 165 32.1
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.6e-14 82.4 45 77.8
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 8.1e-14 81.3 55 78.2
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.4e-13 80.5 173 32.4
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 1.8e-13 80.1 123 42.3
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 5.2e-13 78.6 141 42.6
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 8.9e-13 77.8 48 87.5
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.5e-12 77.0 45 88.9
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.6e-12 76.3 127 39.4
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.4e-12 75.9 45 73.3
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.8e-12 75.1 38 81.6
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 3.7e-11 72.4 87 55.2
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.7e-11 72.4 38 78.9
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 4.9e-11 72.0 32 90.6
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 4.9e-11 72.0 32 90.6
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-10 70.5 43 83.7
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.4e-10 68.6 56 69.6
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 7.1e-10 68.2 48 77.1
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.2e-09 67.4 115 39.1
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.5e-09 65.9 34 76.5
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.0e-08 64.3 43 79.1
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.0e-08 64.3 54 57.4
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.9e-07 60.1 39 79.5
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 8.1e-06 54.7 40 75.0


User provided reference genes

Program Settings