Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 1.2e-118 429.9 213 100.0
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 1.2e-118 429.9 213 100.0
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 1.2e-118 429.9 213 100.0
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 1.2e-118 429.9 213 100.0
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 1.2e-118 429.9 213 100.0
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 5.8e-118 427.6 213 99.5
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 5.8e-118 427.6 213 99.5
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 6.0e-115 417.5 213 97.2
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 1.0e-114 416.8 213 96.2
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-85 320.5 174 93.7
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.3e-80 303.5 213 69.0
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 2.1e-80 302.8 213 67.6
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 2.1e-80 302.8 213 67.6
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 3.7e-80 302.0 213 69.5
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 4.8e-80 301.6 213 68.5
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 1.4e-79 300.1 215 69.8
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 5.3e-79 298.1 212 67.9
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 2.0e-78 296.2 212 67.9
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 3.4e-78 295.4 217 70.0
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 9.3e-76 287.3 213 65.7
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-75 284.6 213 65.3
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-75 284.6 213 65.3
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-75 284.6 213 65.3
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 7.9e-75 284.3 209 64.6
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 1.0e-74 283.9 213 65.3
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.3e-74 282.7 213 64.8
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 1.5e-73 280.0 214 65.9
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 2.5e-73 279.3 208 66.3
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 5.7e-73 278.1 212 63.7
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.4e-73 277.7 213 63.8
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 9.7e-73 277.3 213 70.9
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 9.7e-73 277.3 211 64.9
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 9.7e-73 277.3 211 64.9
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 8.2e-72 274.2 216 63.9
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.2e-70 270.4 213 63.4
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 1.5e-70 270.0 207 67.6
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 4.5e-70 268.5 221 62.4
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 1.3e-69 266.9 213 62.4
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 3.8e-69 265.4 201 65.7
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 4.2e-68 261.9 196 65.8
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.4e-68 260.8 213 61.5
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-67 259.2 213 61.0
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-67 258.1 213 60.6
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-65 253.4 212 60.8
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 7.4e-65 251.1 213 61.0
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.8e-63 246.5 209 57.4
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 1.2e-62 243.8 216 58.3
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 2.0e-62 243.0 211 59.7
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 2.2e-61 239.6 120 99.2
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 2.5e-60 236.1 214 59.3
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 3.2e-60 235.7 120 95.8
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.6e-59 233.4 170 68.2
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 3.0e-58 229.2 214 58.4
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.8e-58 227.6 171 67.3
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.8e-58 227.6 171 67.3
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.8e-58 227.6 171 67.3
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.8e-58 227.6 171 67.3
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.8e-58 227.6 171 67.3
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 1.5e-57 226.9 211 55.9
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.7e-57 224.9 160 71.9
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 4.1e-55 218.8 211 53.6
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 4.1e-55 218.8 211 53.6
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.5e-54 215.7 215 56.7
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.0e-53 214.2 159 66.7
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.1e-52 210.7 185 61.6
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-51 207.2 144 68.8
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 1.2e-51 207.2 200 54.5
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.3e-50 203.0 157 66.9
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.3e-50 203.0 213 52.1
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 5.7e-49 198.4 159 62.3
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.2e-48 194.5 213 50.2
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 1.1e-47 194.1 144 65.3
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 2.4e-47 193.0 96 99.0
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.0e-45 187.6 159 66.0
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.5e-44 183.0 151 62.3
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 6.1e-43 178.3 122 72.1
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 6.8e-42 174.9 164 53.7
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.8e-42 174.5 130 67.7
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.3e-40 170.6 143 61.5
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 2.8e-40 169.5 174 51.7
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 1.4e-39 167.2 126 63.5
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 1.0e-37 161.0 123 65.0
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 6.5e-37 158.3 126 61.1
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 6.1e-35 151.8 162 53.1
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 9.8e-33 144.4 103 69.9
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 7.7e-30 134.8 118 58.5
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 2.9e-29 132.9 176 48.9
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.3e-28 129.4 105 65.7
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 4.3e-28 129.0 115 54.8
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 8.0e-27 124.8 85 71.8
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 4.0e-26 122.5 97 61.9
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 1.5e-25 120.6 97 60.8
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.3e-24 117.5 136 46.3
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.2e-24 116.7 121 50.4
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 2.2e-24 116.7 85 67.1
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.2e-24 116.7 80 71.2
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-23 113.2 89 64.0
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-18 97.1 164 40.9
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 2.3e-18 96.7 49 91.8
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 7.5e-17 91.7 73 58.9
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.3e-16 90.9 66 68.2
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 2.9e-16 89.7 64 68.8
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.2e-15 86.3 53 83.0
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.2e-14 84.3 93 51.6
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 1.6e-14 84.0 68 66.2
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 1.6e-14 84.0 211 32.2
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 1.0e-13 81.3 178 36.0
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.0e-13 81.3 51 68.6
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.0e-13 79.0 69 59.4
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.2e-11 74.3 60 56.7
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 4.7e-11 72.4 59 57.6
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 9.8e-09 64.7 78 48.7
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 9.8e-09 64.7 56 53.6
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.3e-08 64.3 52 67.3
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.9e-08 63.2 95 37.9
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.1e-07 61.2 68 47.1
Aa31sc304G20 Aethionema arabicum HOM05D004473 ORTHO05D005652 4.1e-07 59.3 114 39.5
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 4.1e-07 59.3 58 53.4
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 4.1e-07 59.3 42 76.2
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 1.6e-06 57.4 42 57.1
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 6.0e-06 55.5 48 54.2


User provided reference genes

Program Settings