Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 2.5e-37 158.3 80 100.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 1.4e-27 125.9 76 92.1
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.4e-27 125.9 76 92.1
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 1.4e-27 125.9 76 92.1
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 1.4e-27 125.9 76 92.1
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 1.8e-27 125.6 77 90.9
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 1.1e-26 122.9 77 89.6
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 4.3e-26 120.9 78 89.7
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 2.2e-25 118.6 78 87.2
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 3.7e-25 117.9 75 88.0
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 8.2e-25 116.7 74 87.8
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 1.1e-24 116.3 68 92.6
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 1.1e-24 116.3 68 92.6
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 5.9e-23 110.5 74 83.8
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 1.3e-22 109.4 74 82.4
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.7e-22 109.0 70 87.1
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 6.5e-22 107.1 74 82.4
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 2.7e-20 101.7 74 78.4
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 6.1e-20 100.5 74 77.0
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 7.9e-20 100.1 74 78.4
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 7.9e-20 100.1 74 75.7
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 7.9e-20 100.1 74 75.7
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 1.8e-19 99.0 74 77.0
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 3.9e-19 97.8 74 75.7
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 6.7e-19 97.1 81 75.3
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 5.7e-18 94.0 74 74.3
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 1.7e-17 92.4 66 80.3
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 4.8e-17 90.9 74 71.6
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.8e-17 90.9 74 71.6
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-16 89.4 74 68.9
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 1.4e-16 89.4 74 70.3
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.8e-16 89.0 74 70.3
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 5.3e-16 87.4 110 53.6
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 7.0e-16 87.0 74 70.3
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 3.5e-15 84.7 74 70.3
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 3.5e-15 84.7 74 70.3
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 3.5e-15 84.7 74 70.3
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 3.5e-15 84.7 74 70.3
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 3.5e-15 84.7 74 70.3
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.5e-15 84.7 84 65.5
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 1.0e-14 83.2 75 65.3
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 8.5e-14 80.1 47 89.4
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 2.5e-13 78.6 48 87.5
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 3.2e-13 78.2 47 87.2
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.6e-12 75.9 74 63.5
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.7e-12 75.1 72 62.5
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 3.6e-12 74.7 77 61.0
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.7e-12 74.3 47 83.0
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 4.7e-12 74.3 47 83.0
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.1e-12 73.9 47 83.0
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.0e-11 71.2 47 83.0
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.7e-11 70.5 81 56.8
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.5e-10 69.3 50 78.0
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 2.6e-10 68.6 48 75.0
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 7.5e-10 67.0 47 76.6
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 9.7e-10 66.6 46 78.3
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 1.7e-09 65.9 39 87.2
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.2e-09 63.5 41 78.0
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 1.8e-08 62.4 48 68.8
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 3.5e-07 58.2 48 68.8


User provided reference genes

Program Settings