Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 1.9e-43 178.7 85 100.0
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.5e-34 147.9 69 100.0
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 3.5e-34 147.9 69 100.0
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 3.5e-34 147.9 69 100.0
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 3.5e-34 147.9 69 100.0
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 3.5e-34 147.9 69 100.0
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 1.0e-33 146.4 69 98.6
Oeu020621.1 Olea europaea HOM05D007952 ORTHO05D009823 1.5e-32 142.5 69 95.7
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.3e-32 141.4 69 95.7
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 4.3e-32 141.0 69 97.1
Nn5g29057 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.4e-32 140.2 69 97.1
Sc01g0006530 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.3e-31 139.4 69 95.7
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 1.6e-31 139.0 69 94.2
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 2.8e-31 138.3 77 88.3
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 3.7e-31 137.9 73 91.8
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 1.1e-30 136.3 88 78.4
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 1.1e-30 136.3 88 78.4
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.1e-30 136.3 88 78.4
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 4.0e-30 134.4 91 74.7
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 5.3e-30 134.0 73 89.0
Sc04g0003580 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.2e-29 132.9 74 85.1
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.0e-29 132.1 93 73.1
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.0e-29 132.1 93 73.1
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.0e-29 132.1 93 73.1
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.0e-29 132.1 93 73.1
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 2.6e-29 131.7 88 76.1
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 7.6e-29 130.2 83 79.5
arahy.Tifrunner.gnm1.ann1.PHD7EH Arachis hypogaea HOM05D007952 ORTHO05D009823 1.7e-28 129.0 69 88.4
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 1.1e-27 126.3 69 89.9
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 7.1e-27 123.6 63 93.7
arahy.Tifrunner.gnm1.ann1.J5KLX8 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.1e-22 109.8 87 66.7
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 1.4e-22 109.4 52 98.1
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 2.4e-22 108.6 66 80.3
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 4.0e-22 107.8 61 85.2
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 1.2e-21 106.3 65 78.5
Sc21g0004590 Simmondsia chinensis HOM05D007952 ORTHO05D009823 3.4e-21 104.8 68 73.5
Psat0ss8367g0160 Pisum sativum HOM05D001387 ORTHO05D001250 2.2e-20 102.1 64 75.0
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 1.1e-19 99.8 60 83.3
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 1.4e-19 99.4 50 92.0
MBI08_g48227_MAGBIO Magnolia biondii HOM05D007952 ORTHO05D009823 1.4e-19 99.4 50 92.0
Peaxi162Scf00987g00215 Petunia axillaris HOM05D007952 ORTHO05D009823 1.4e-19 99.4 50 92.0
unitig_87.g27919 Utricularia gibba HOM05D007952 ORTHO05D009823 1.4e-19 99.4 50 92.0
unitig_87.g28035 Utricularia gibba HOM05D007952 ORTHO05D009823 1.4e-19 99.4 50 92.0
unitig_91.g26519 Utricularia gibba HOM05D007952 ORTHO05D009823 1.4e-19 99.4 50 92.0
BcaC04g20704 Brassica carinata HOM05D007952 ORTHO05D009823 2.5e-19 98.6 69 75.4
EL10As10g23962 Beta vulgaris HOM05D007952 ORTHO05D009823 3.5e-18 94.7 50 90.0
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 6.0e-18 94.0 56 80.4
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 6.0e-18 94.0 42 100.0
Atru.chr9.365 Acer truncatum HOM05D007952 ORTHO05D009823 2.3e-17 92.0 43 95.3
Hma1.2p1_0594F.1_g185798 Hydrangea macrophylla HOM05D007952 ORTHO05D009823 8.7e-17 90.1 42 97.6
Lj2C1239G84 Lonicera japonica HOM05D007952 ORTHO05D009823 8.7e-17 90.1 42 97.6
Peaxi162Scf00002g00723 Petunia axillaris HOM05D007952 ORTHO05D009823 1.1e-16 89.7 54 75.9
Sc23g0003910 Simmondsia chinensis HOM05D007952 ORTHO05D009823 4.3e-16 87.8 54 77.8
ECA232G1868 Erigeron canadensis HOM05D000002 ORTHO05D002065 1.8e-14 82.4 38 94.7
Oeu000007.1 Olea europaea HOM05D007952 ORTHO05D009823 2.4e-14 82.0 63 65.1
Oeu012768.1 Olea europaea HOM05D007952 ORTHO05D009823 1.5e-13 79.3 55 74.5
SEGI_20804 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.5e-13 79.3 47 78.7
Actinidia30703 Actinidia chinensis HOM05D001966 ORTHO05D009823 7.7e-13 77.0 59 71.2
SEGI_08440 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 2.9e-12 75.1 42 83.3
SEGI_09919 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 2.9e-12 75.1 42 83.3
SEGI_21867 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 2.9e-12 75.1 42 83.3
SEGI_38349 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 2.9e-12 75.1 42 83.3
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.1e-11 73.2 70 58.6
Potri.005G037850 Populus trichocarpa HOM05D007952 ORTHO05D009823 1.2e-10 69.7 43 76.7
Oeu022560.1 Olea europaea HOM05D007952 ORTHO05D009823 1.6e-10 69.3 51 64.7
Nitab4.5_0004552g0010 Nicotiana tabacum HOM05D000796 ORTHO05D009823 2.7e-10 68.6 58 62.1
Nn6g32821 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.6e-10 67.8 30 96.7
Nn6g32826 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.6e-10 67.8 30 96.7
Nitab4.5_0007400g0010 Nicotiana tabacum HOM05D007952 ORTHO05D009823 1.4e-09 66.2 33 81.8
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.0e-09 65.1 30 93.3
SEGI_02200 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 8.8e-09 63.5 44 70.5
SEGI_35056 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 8.8e-09 63.5 32 87.5
Nitab4.5_0007025g0020 Nicotiana tabacum HOM05D001226 ORTHO05D009823 7.4e-08 60.5 45 66.7
BolC6t36075H Brassica oleracea HOM05D000963 ORTHO05D009823 1.7e-07 59.3 29 86.2
arahy.Tifrunner.gnm1.ann1.9E5EUV Arachis hypogaea HOM05D000388 ORTHO05D000473 2.8e-07 58.5 62 56.5
Nn031s41604 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.7e-07 58.2 27 100.0
Nn233s45560 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.7e-07 58.2 27 100.0
Nn241s45689 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.7e-07 58.2 27 100.0
Nn6g33131 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.7e-07 58.2 27 100.0
Nn6g33484 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.7e-07 58.2 27 100.0
Oeu011728.3 Olea europaea HOM05D002681 ORTHO05D003372 3.7e-07 58.2 27 100.0
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 3.7e-07 58.2 27 100.0
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 3.7e-07 58.2 27 100.0
Nn6g33130 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.8e-07 57.8 25 96.0
CAN.G8.21 Capsicum annuum HOM05D000580 ORTHO05D001362 8.2e-07 57.0 54 53.7
CBR_g12953 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-06 56.2 38 68.4
Atru.chr9.2550 Acer truncatum HOM05D010190 ORTHO05D009823 2.4e-06 55.5 27 92.6
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 3.1e-06 55.1 27 96.3
Phvul.009G038333 Phaseolus vulgaris HOM05D007952 ORTHO05D009823 3.1e-06 55.1 27 96.3
Nn1g08228 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.3e-06 54.3 27 92.6
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 9.1e-06 53.5 27 92.6


User provided reference genes

Program Settings