Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60529H Brassica oleracea HOM05D002824 ORTHO05D007162 1.6e-68 262.7 135 100.0
BolSC29t60610H Brassica oleracea HOM05D002824 ORTHO05D007162 1.6e-68 262.7 135 100.0
BolSC35t60729H Brassica oleracea HOM05D002824 ORTHO05D007162 1.6e-68 262.7 135 100.0
BraSC103t45445Z Brassica rapa HOM05D002824 ORTHO05D007162 1.6e-68 262.7 135 100.0
BraSC138t45553Z Brassica rapa HOM05D002824 ORTHO05D007162 1.6e-68 262.7 135 100.0
ATCG00770 Arabidopsis thaliana HOM05D002824 ORTHO05D007162 4.5e-68 261.2 135 99.3
BNapus_Darmor_BZH_scaffold_253p00350 Brassica napus HOM05D002824 ORTHO05D007162 4.5e-68 261.2 135 99.3
CARHR282250 Cardamine hirsuta HOM05D002824 ORTHO05D007162 5.9e-68 260.8 135 98.5
BraSC58t46441Z Brassica rapa HOM05D002824 ORTHO05D007162 7.7e-68 260.4 135 99.3
AL2G20560 Arabidopsis lyrata HOM05D002824 ORTHO05D007162 1.7e-67 259.2 135 98.5
AL2G21720 Arabidopsis lyrata HOM05D002824 ORTHO05D007162 1.7e-67 259.2 135 98.5
C02p60170 Brassica napus HOM05D002824 ORTHO05D007162 5.0e-67 257.7 135 98.5
BNapus_Darmor_BZH_scaffold_287p00270 Brassica napus HOM05D002824 ORTHO05D007162 6.6e-67 257.3 135 97.0
BraA06t25384Z Brassica rapa HOM05D002824 ORTHO05D007162 2.4e-61 238.8 134 94.0
PGR111G0083 Punica granatum HOM05D002824 ORTHO05D007162 1.5e-58 229.6 135 86.7
Gohir.1Z050134 Gossypium hirsutum HOM05D002824 ORTHO05D007162 3.3e-58 228.4 135 84.4
CAN.G1595.2 Capsicum annuum HOM05D002824 ORTHO05D007162 7.3e-58 227.3 135 84.4
Solyc00g500031.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 7.3e-58 227.3 135 84.4
Solyc00g500076.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 7.3e-58 227.3 135 84.4
RcHm_v2.0_CPg0501871 Rosa chinensis HOM05D002824 ORTHO05D007162 3.6e-57 224.9 135 83.7
Cpa.g.sc0.196 Carica papaya HOM05D002824 ORTHO05D007162 4.7e-57 224.6 130 87.7
Gohir.A12G024800 Gossypium hirsutum HOM05D002824 ORTHO05D007162 6.2e-57 224.2 135 83.0
PSO548G0051 Papaver somniferum HOM05D002824 ORTHO05D007162 1.0e-56 223.4 135 85.2
Migut.D01328 Erythranthe guttata HOM05D002824 ORTHO05D007162 1.8e-56 222.6 135 83.0
HanXRQChr00c0394g0574541 Helianthus annuus HOM05D002824 ORTHO05D007162 1.8e-56 222.6 135 82.2
HanXRQChr01g0020211 Helianthus annuus HOM05D002824 ORTHO05D007162 1.8e-56 222.6 135 82.2
HanXRQChr10g0284391 Helianthus annuus HOM05D002824 ORTHO05D007162 1.8e-56 222.6 135 82.2
HanXRQChr10g0318051 Helianthus annuus HOM05D002824 ORTHO05D007162 1.8e-56 222.6 135 82.2
HanXRQChr11g0326971 Helianthus annuus HOM05D002824 ORTHO05D007162 1.8e-56 222.6 135 82.2
HanXRQChr12g0369861 Helianthus annuus HOM05D002824 ORTHO05D007162 1.8e-56 222.6 135 82.2
HanXRQCPg0580191 Helianthus annuus HOM05D002824 ORTHO05D007162 1.8e-56 222.6 135 82.2
CAN.G327.20 Capsicum annuum HOM05D002824 ORTHO05D007162 3.1e-56 221.9 135 83.0
BolC9t57548H Brassica oleracea HOM05D002824 ORTHO05D007162 6.8e-56 220.7 117 98.3
Gohir.A06G056900 Gossypium hirsutum HOM05D002824 ORTHO05D007162 6.8e-56 220.7 135 81.5
DCAR_032521 Daucus carota HOM05D002824 ORTHO05D007162 8.9e-56 220.3 135 81.5
TAR375G0295 Trochodendron aralioides HOM05D002824 ORTHO05D007162 2.0e-55 219.2 135 83.0
Nn021s41522 Nelumbo nucifera HOM05D002824 ORTHO05D007162 9.8e-55 216.9 135 82.2
Lalb_Chr25g0283371 Lupinus albus HOM05D002824 ORTHO05D007162 3.7e-54 214.9 135 80.7
HanXRQChr17g0554561 Helianthus annuus HOM05D002824 ORTHO05D007162 1.1e-53 213.4 135 78.5
Lalb_Chr03g0039321 Lupinus albus HOM05D002824 ORTHO05D007162 3.2e-53 211.8 135 80.0
ClCG00G003160 Citrullus lanatus HOM05D002824 ORTHO05D007162 9.2e-53 210.3 131 82.4
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.5e-50 202.2 125 83.2
Lalb_Chr23g0274241 Lupinus albus HOM05D002824 ORTHO05D007162 5.6e-50 201.1 135 75.6
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-49 197.6 129 80.6
Gohir.D01G102138 Gossypium hirsutum HOM05D002824 ORTHO05D007162 2.3e-48 195.7 118 83.1
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 2.3e-48 195.7 130 77.7
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 2.3e-48 195.7 130 77.7
Gohir.D11G307000 Gossypium hirsutum HOM05D002824 ORTHO05D007162 4.0e-48 194.9 118 80.5
Gohir.A05G396400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.2e-47 193.4 114 82.5
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.0e-47 192.6 127 80.3
LjContig00318g0002732 Lotus japonicus HOM05D002824 ORTHO05D007162 4.9e-46 188.0 135 74.1
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 1.1e-45 186.8 118 79.7
Lsat_1_v5_gn_1_116300 Lactuca sativa HOM05D002824 ORTHO05D007162 1.4e-45 186.4 131 75.6
HanXRQChr11g0345281 Helianthus annuus HOM05D002824 ORTHO05D007162 7.1e-45 184.1 118 77.1
Medtr4g059910 Medicago truncatula HOM05D002824 ORTHO05D007162 6.0e-44 181.0 107 81.3
Gorai.003G111500 Gossypium raimondii HOM05D002824 ORTHO05D007162 2.3e-43 179.1 118 77.1
Gohir.D03G105400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 5.1e-43 177.9 118 76.3
HanXRQChr00c0925g0577901 Helianthus annuus HOM05D002824 ORTHO05D007162 6.6e-43 177.6 113 79.6
BolC7t41708H Brassica oleracea HOM05D002824 ORTHO05D007162 7.3e-42 174.1 94 96.8
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.1e-41 170.6 115 79.1
SEGI_33981 Sequoiadendron giganteum HOM05D002824 ORTHO05D007162 5.2e-40 167.9 135 63.0
Thhalv10027382m.g Eutrema salsugineum HOM05D002824 ORTHO05D007162 4.9e-38 161.4 87 96.6
C09p46990 Brassica napus HOM05D002824 ORTHO05D007162 2.1e-36 156.0 82 98.8
Eucgr.E03558 Eucalyptus grandis HOM05D002824 ORTHO05D007162 4.6e-36 154.8 112 71.4
Gohir.A12G228400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 5.1e-35 151.4 91 81.3
Gorai.005G065900 Gossypium raimondii HOM05D002824 ORTHO05D007162 1.6e-33 146.4 97 77.3
GSVIVG01014320001 Vitis vinifera HOM05D002824 ORTHO05D007162 1.1e-32 143.7 92 79.3
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 7.6e-31 137.5 85 82.4
Phvul.001G158000 Phaseolus vulgaris HOM05D002824 ORTHO05D007162 7.6e-31 137.5 99 69.7
Gohir.D08G062280 Gossypium hirsutum HOM05D002824 ORTHO05D007162 2.2e-30 136.0 135 58.5
Gohir.D08G194656 Gossypium hirsutum HOM05D002824 ORTHO05D007162 8.4e-30 134.0 135 57.8
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.4e-29 133.3 84 79.8
arahy.Tifrunner.gnm1.ann1.BAD1H7 Arachis hypogaea HOM05D002824 ORTHO05D007162 6.0e-28 127.9 90 76.7
Gorai.013G136400 Gossypium raimondii HOM05D002824 ORTHO05D007162 7.3e-26 120.9 70 84.3
MBI05_g05353_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D007162 1.4e-24 116.7 77 75.3
Gohir.D13G121750 Gossypium hirsutum HOM05D002824 ORTHO05D007162 2.4e-24 115.9 70 84.3
BolSC56t61248H Brassica oleracea HOM05D002824 ORTHO05D007162 5.3e-24 114.8 58 100.0
BraSC59t46570Z Brassica rapa HOM05D002824 ORTHO05D007162 5.3e-24 114.8 58 100.0
SMO086G0055 Selaginella moellendorffii HOM05D002824 ORTHO05D007162 5.3e-24 114.8 134 45.5
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.2e-22 109.4 69 78.3
Lalb_Chr20g0114531 Lupinus albus HOM05D002824 ORTHO05D007162 1.9e-21 106.3 70 77.1
EL10As15g24111 Beta vulgaris HOM05D002824 ORTHO05D007162 9.3e-21 104.0 76 67.1
BolSC35t60670H Brassica oleracea HOM05D002824 ORTHO05D007162 1.2e-20 103.6 58 91.4
BolSC49t61163H Brassica oleracea HOM05D002824 ORTHO05D007162 1.2e-20 103.6 53 100.0
Gohir.A08G063166 Gossypium hirsutum HOM05D002824 ORTHO05D007162 3.5e-20 102.1 58 86.2
BraSC103t45484Z Brassica rapa HOM05D002824 ORTHO05D007162 5.1e-19 98.2 59 88.1
MELO3C027652.2 Cucumis melo HOM05D002824 ORTHO05D007162 6.7e-19 97.8 60 83.3
BraSC58t46502Z Brassica rapa HOM05D002824 ORTHO05D007162 2.5e-18 95.9 58 86.2
Nitab4.5_0000173g0100 Nicotiana tabacum HOM05D000964 ORTHO05D001488 1.3e-17 93.6 55 85.5
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.6e-17 93.2 63 77.8
HanXRQChr00c0593g0576371 Helianthus annuus HOM05D002824 ORTHO05D007162 8.1e-17 90.9 58 79.3
HanXRQChr04g0127481 Helianthus annuus HOM05D002824 ORTHO05D007162 8.1e-17 90.9 58 79.3
HanXRQChr11g0321101 Helianthus annuus HOM05D002824 ORTHO05D007162 8.1e-17 90.9 58 79.3
MELO3C026355.2 Cucumis melo HOM05D002824 ORTHO05D007162 2.4e-16 89.4 58 79.3
Medtr3g035490 Medicago truncatula HOM05D001133 ORTHO05D000941 6.9e-16 87.8 52 80.8
FAN18G2960 Fragaria x ananassa HOM05D015635 ORTHO05D007162 1.7e-14 83.2 56 75.0
MELO3C033570.2 Cucumis melo HOM05D002824 ORTHO05D007162 1.9e-13 79.7 60 75.0
BraSC143t45637Z Brassica rapa HOM05D002824 ORTHO05D007162 3.5e-12 75.5 39 97.4
SEGI_01834 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.3e-11 73.6 56 62.5
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.3e-11 73.6 56 62.5
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.3e-11 73.6 56 62.5
SEGI_09600 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.3e-11 73.6 56 62.5
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.3e-11 73.6 56 62.5
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.3e-11 73.6 56 62.5
SEGI_27642 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.3e-11 73.6 56 62.5
SEGI_30352 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 3.9e-11 72.0 56 60.7
SGA_v2.0_scaffold208G41997 Striga asiatica HOM05D002824 ORTHO05D007162 3.9e-11 72.0 50 74.0
arahy.Tifrunner.gnm1.ann1.TW2HF4 Arachis hypogaea HOM05D000216 ORTHO05D000634 4.3e-10 68.6 51 70.6
Hund08020 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.8e-09 65.9 76 52.6
arahy.Tifrunner.gnm1.ann1.CYZ3KW Arachis hypogaea HOM05D001828 ORTHO05D001745 4.8e-09 65.1 42 78.6
ClCG10G008280 Citrullus lanatus HOM05D002824 ORTHO05D007162 9.0e-08 60.8 36 86.1
Hund15214 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.0e-06 57.4 60 55.0


User provided reference genes

Program Settings