Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 4.2e-124 448.0 215 100.0
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 4.2e-124 448.0 215 100.0
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 5.3e-111 404.4 214 91.6
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 5.3e-111 404.4 214 91.6
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 5.3e-111 404.4 214 91.6
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 5.3e-111 404.4 214 91.6
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 1.0e-90 337.0 179 89.9
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 1.0e-90 337.0 179 89.9
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 5.5e-76 288.1 208 73.1
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 2.3e-74 282.7 179 78.8
BolSC49t61153H Brassica oleracea HOM05D008016 ORTHO05D010588 3.7e-72 275.4 136 97.1
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 8.6e-53 211.1 101 100.0
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 1.5e-41 173.7 109 81.7
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 2.9e-40 169.5 231 50.2
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 7.1e-39 164.9 232 49.1
BolSC44t60832H Brassica oleracea HOM05D008016 ORTHO05D010588 9.2e-39 164.5 83 95.2
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 2.1e-38 163.3 231 50.2
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 2.7e-38 162.9 112 75.0
BolSC47t61058H Brassica oleracea HOM05D008016 ORTHO05D010588 1.5e-33 147.1 77 87.0
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 7.6e-33 144.8 84 85.7
BolSC29t60625H Brassica oleracea HOM05D008016 ORTHO05D010588 2.8e-27 126.3 76 76.3
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 4.7e-27 125.6 97 69.1
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 4.7e-27 125.6 97 69.1
BolSC44t60813H Brassica oleracea HOM05D008016 ORTHO05D010588 4.7e-27 125.6 81 72.8
BraSC179t45783Z Brassica rapa HOM05D008016 ORTHO05D004271 4.7e-27 125.6 88 76.1
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 1.4e-26 124.0 157 51.0
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 2.6e-25 119.8 159 47.2
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 3.8e-24 115.9 55 96.4
Gohir.D07G151450 Gossypium hirsutum HOM05D008016 ORTHO05D004271 3.8e-24 115.9 106 63.2
BolSC45t60899H Brassica oleracea HOM05D008016 ORTHO05D004271 7.1e-23 111.7 56 98.2
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 1.5e-20 104.0 74 71.6
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.9e-20 103.6 49 93.9
BraSC58t46467Z Brassica rapa HOM05D008016 ORTHO05D010588 3.3e-20 102.8 48 100.0
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 3.3e-20 102.8 48 95.8
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 3.3e-20 102.8 57 86.0
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 5.6e-20 102.1 120 50.8
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 1.3e-19 100.9 57 84.2
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 1.6e-19 100.5 87 63.2
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 1.6e-19 100.5 63 85.7
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 1.6e-19 100.5 63 85.7
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-19 100.1 65 78.5
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-19 100.1 65 78.5
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 2.1e-19 100.1 48 95.8
Lsat_1_v5_gn_4_68181 Lactuca sativa HOM05D008016 ORTHO05D010055 2.1e-19 100.1 109 52.3
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.8e-19 99.8 48 93.8
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.4e-18 97.4 69 69.6
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 2.4e-18 96.7 55 85.5
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 4.0e-18 95.9 56 85.7
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 5.3e-18 95.5 53 84.9
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 1.5e-17 94.0 62 71.0
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 3.4e-17 92.8 55 80.0
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 8.4e-16 88.2 91 56.0
Gohir.1Z049580 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.4e-15 87.4 81 60.5
EL10As10g23964 Beta vulgaris HOM05D001966 ORTHO05D010055 1.9e-15 87.0 89 55.1
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 2.1e-14 83.6 43 90.7
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 2.7e-14 83.2 62 66.1
arahy.Tifrunner.gnm1.ann1.PRQI1Y Arachis hypogaea HOM05D008016 ORTHO05D010588 4.6e-14 82.4 78 57.7
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 4.6e-14 82.4 138 44.9
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 1.0e-13 81.3 93 49.5
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.3e-13 80.1 195 35.9
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.3e-13 80.1 65 67.7
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 2.5e-12 76.6 58 74.1
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 4.3e-12 75.9 63 61.9
arahy.Tifrunner.gnm1.ann1.V4KXIX Arachis hypogaea HOM05D009726 ORTHO05D010588 5.6e-12 75.5 63 63.5
Oeu040617.1 Olea europaea HOM05D008016 ORTHO05D004271 2.1e-11 73.6 43 88.4
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 3.6e-11 72.8 52 73.1
arahy.Tifrunner.gnm1.ann1.54SFA9 Arachis hypogaea HOM05D008037 ORTHO05D004271 4.8e-11 72.4 53 69.8
RcHm_v2.0_Chr2g0095251 Rosa chinensis HOM05D008016 ORTHO05D004271 6.2e-11 72.0 40 90.0
Nitab4.5_0004841g0100 Nicotiana tabacum HOM05D008016 ORTHO05D010055 8.1e-11 71.6 38 86.8
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 3.1e-10 69.7 56 67.9
arahy.Tifrunner.gnm1.ann1.27WM5S Arachis hypogaea HOM05D009726 ORTHO05D010588 9.0e-10 68.2 76 48.7
Nitab4.5_0006502g0020 Nicotiana tabacum HOM05D001966 ORTHO05D010055 1.5e-09 67.4 84 47.6
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 9.9e-09 64.7 173 32.9
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.7e-08 63.9 47 72.3
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 1.7e-08 63.9 33 93.9
CiPaw.14G028800 Carya illinoinensis HOM05D008016 ORTHO05D004271 2.2e-08 63.5 55 60.0
MD00G1140100 Malus domestica HOM05D008016 ORTHO05D004271 2.2e-08 63.5 34 88.2
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 3.8e-08 62.8 52 65.4
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 6.4e-08 62.0 35 80.0
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 6.4e-08 62.0 57 59.6
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 8.4e-08 61.6 55 63.6
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 3.2e-07 59.7 95 44.2
BNapus_Darmor_BZH_scaffold_69p00020 Brassica napus HOM05D008016 ORTHO05D010588 4.2e-07 59.3 47 61.7
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 4.2e-07 59.3 47 61.7
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 4.2e-07 59.3 47 61.7
CARHR282370 Cardamine hirsuta HOM05D008016 ORTHO05D010588 4.2e-07 59.3 47 61.7
Gohir.A02G134102 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.2e-06 57.8 27 100.0
EL10Ac6g14592 Beta vulgaris HOM05D008354 ORTHO05D010055 2.1e-06 57.0 29 96.6
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 2.1e-06 57.0 45 68.9
arahy.Tifrunner.gnm1.ann1.T4T886 Arachis hypogaea HOM05D009726 ORTHO05D010588 4.6e-06 55.8 47 61.7


User provided reference genes

Program Settings