Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 2.3e-182 642.1 329 100.0
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 2.3e-182 642.1 329 100.0
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 2.3e-182 642.1 329 100.0
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 2.3e-182 642.1 329 100.0
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 2.3e-182 642.1 329 100.0
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 1.1e-181 639.8 327 100.0
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 7.4e-181 637.1 329 99.4
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 7.4e-181 637.1 329 99.4
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 9.7e-181 636.7 329 99.1
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 9.7e-181 636.7 329 99.1
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 9.7e-181 636.7 329 99.1
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 9.7e-181 636.7 329 99.1
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-178 629.8 329 98.8
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 7.7e-170 600.5 329 92.7
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 9.1e-163 577.0 302 98.3
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.7e-132 475.3 330 73.9
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.7e-132 475.3 330 73.9
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 4.6e-130 468.4 239 98.3
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 6.2e-127 458.0 325 73.5
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 6.4e-124 448.0 326 73.3
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.3e-121 440.3 326 71.2
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.3e-121 440.3 326 71.2
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 6.6e-121 438.0 326 69.9
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 6.6e-121 438.0 326 69.9
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 6.6e-121 438.0 326 69.9
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 6.6e-121 438.0 326 69.9
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 4.3e-120 435.3 325 69.8
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 7.3e-120 434.5 331 69.8
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 7.3e-120 434.5 331 69.8
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-119 433.7 327 70.0
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-119 433.7 327 70.0
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-119 433.7 327 70.0
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-119 433.7 327 70.0
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 1.8e-118 429.9 327 69.4
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 4.4e-117 425.2 328 70.1
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 1.9e-115 419.9 327 67.9
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 2.4e-115 419.5 331 69.2
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 2.4e-115 419.5 331 67.7
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.0e-114 414.8 284 73.9
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 9.6e-112 407.5 328 66.2
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 5.2e-110 401.7 330 66.7
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.5e-109 400.2 330 64.5
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-109 400.2 326 65.6
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 2.0e-109 399.8 339 64.9
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.9e-108 396.0 289 70.9
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 1.1e-104 384.0 329 62.6
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 7.6e-101 371.3 302 65.6
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 3.2e-99 365.9 199 97.5
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.6e-98 363.6 278 69.4
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 3.3e-96 355.9 326 60.7
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-94 349.0 276 67.4
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 6.4e-92 341.7 326 58.3
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 4.6e-90 335.5 326 58.3
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 6.7e-89 331.6 280 61.8
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-84 315.5 183 94.5
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 6.0e-82 308.5 280 59.6
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.2e-77 294.3 279 59.5
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 3.2e-75 286.2 144 99.3
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.7e-72 275.4 276 54.3
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.7e-72 275.4 276 54.3
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.7e-72 275.4 276 54.3
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.7e-72 275.4 276 54.3
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.7e-72 275.4 276 54.3
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.2e-69 267.7 284 51.4
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 2.6e-69 266.5 233 62.2
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 3.4e-69 266.2 229 66.8
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 2.2e-68 263.5 175 75.4
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-67 260.8 187 70.6
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.1e-66 256.9 141 90.1
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 8.8e-65 251.5 183 69.4
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 4.4e-64 249.2 321 45.8
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.1e-62 242.7 260 53.8
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 9.1e-62 241.5 177 69.5
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 9.1e-62 241.5 177 69.5
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.5e-59 232.3 236 55.1
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.0e-57 226.5 178 69.7
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 8.8e-57 224.9 205 62.9
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 5.5e-51 205.7 188 61.2
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-50 204.1 109 83.5
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 2.7e-50 203.4 113 95.6
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.0e-49 201.4 150 72.7
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 1.8e-49 200.7 294 38.4
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 1.5e-48 197.6 113 77.9
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 2.6e-48 196.8 191 56.5
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 4.1e-46 189.5 107 80.4
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 5.3e-46 189.1 296 38.9
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 2.0e-45 187.2 182 56.6
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.0e-45 187.2 106 78.3
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.7e-44 184.1 186 57.0
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-44 183.7 107 78.5
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.8e-44 183.0 91 90.1
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.8e-44 183.0 91 90.1
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.6e-42 177.6 166 62.0
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.1e-42 177.2 174 57.5
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.7e-42 176.0 276 41.7
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 8.0e-42 175.3 186 53.2
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.0e-40 170.6 124 66.1
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 2.6e-40 170.2 98 92.9
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 6.3e-39 165.6 212 47.2
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.3e-39 165.2 212 46.7
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 5.0e-36 156.0 80 82.5
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-36 156.0 131 67.2
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 8.6e-36 155.2 277 42.6
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-34 151.0 80 81.2
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.0e-33 148.3 165 49.7
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 6.8e-33 145.6 74 83.8
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-31 141.0 117 64.1
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.4e-30 137.9 84 76.2
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 2.4e-30 137.1 258 41.9
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.6e-29 134.4 84 73.8
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-29 134.4 151 53.0
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.0e-28 131.7 70 84.3
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.7e-28 131.0 70 81.4
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.3e-28 130.6 93 75.3
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.8e-28 129.8 184 48.9
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 4.3e-27 126.3 81 71.6
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 4.3e-27 126.3 98 68.4
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-26 124.8 87 70.1
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 8.0e-26 122.1 87 69.0
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.8e-25 120.9 63 84.1
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.9e-23 112.8 67 76.1
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.2e-21 108.2 305 27.5
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.6e-21 107.8 69 81.2
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-20 105.1 77 71.4
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 3.0e-20 103.6 103 57.3
BolC2t10610H Brassica oleracea HOM05D005034 ORTHO05D006234 3.6e-18 96.7 59 89.8
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.6e-18 96.7 62 71.0
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 6.2e-18 95.9 51 86.3
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 8.0e-18 95.5 76 69.7
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 5.2e-17 92.8 53 75.5
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 4.4e-16 89.7 68 72.1
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 5.8e-16 89.4 42 85.7
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 9.8e-16 88.6 61 75.4
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 3.7e-15 86.7 95 54.7
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 7.8e-13 79.0 49 85.7
BolC7t43853H Brassica oleracea HOM05D005034 ORTHO05D006234 1.1e-11 75.1 51 86.3
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 7.3e-11 72.4 87 55.2
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 9.5e-11 72.0 50 72.0
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 2.8e-10 70.5 52 73.1
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.2e-09 66.2 48 72.9
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.6e-08 63.9 54 57.4
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.9e-07 60.5 45 66.7
BolC9t56808H Brassica oleracea HOM05D005034 ORTHO05D106437 3.7e-07 60.1 31 96.8
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.9e-06 57.8 57 56.1


User provided reference genes

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