Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 4.8e-88 327.8 165 100.0
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 6.8e-82 307.4 158 97.5
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 7.5e-73 277.3 166 86.7
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 8.3e-72 273.9 165 85.5
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 9.5e-68 260.4 158 84.8
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 9.5e-68 260.4 159 84.9
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 2.8e-67 258.8 160 84.4
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 1.4e-66 256.5 157 84.1
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 1.4e-66 256.5 157 84.1
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 1.4e-66 256.5 157 84.1
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 1.4e-66 256.5 157 84.1
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.2e-65 253.4 158 82.3
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 3.4e-65 251.9 129 99.2
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.3e-64 250.0 157 81.5
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 1.7e-64 249.6 129 97.7
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-64 249.6 129 97.7
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-64 249.6 129 97.7
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 1.7e-64 249.6 129 97.7
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 1.7e-64 249.6 129 97.7
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 1.7e-64 249.6 129 97.7
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 2.4e-63 245.7 124 100.0
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 9.2e-63 243.8 126 97.6
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 9.2e-63 243.8 126 97.6
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.2e-59 231.1 129 91.5
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.2e-59 231.1 129 91.5
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.2e-59 231.1 129 91.5
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.2e-59 231.1 129 91.5
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.2e-59 231.1 129 91.5
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.2e-59 231.1 129 91.5
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.2e-59 231.1 129 91.5
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.2e-59 231.1 129 91.5
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.2e-59 231.1 135 88.1
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 1.8e-58 229.6 130 92.3
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 1.8e-58 229.6 130 92.3
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.8e-58 229.6 130 91.5
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 5.2e-58 228.0 130 90.0
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 5.2e-58 228.0 130 90.0
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 5.2e-58 228.0 130 90.0
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 5.2e-58 228.0 130 90.0
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-57 226.9 145 84.1
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-57 226.9 145 84.1
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.4e-57 224.9 129 89.9
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.9e-56 222.2 129 89.9
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.9e-55 219.5 145 82.1
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.2e-55 217.2 129 86.8
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.6e-54 216.5 130 86.2
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 3.5e-54 215.3 130 85.4
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 3.5e-54 215.3 130 85.4
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 4.6e-54 214.9 136 83.8
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 7.8e-54 214.2 130 84.6
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 7.8e-54 214.2 130 84.6
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 1.7e-53 213.0 150 77.3
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 2.3e-53 212.6 130 84.6
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 5.6e-52 208.0 130 83.1
Gohir.A11G056832 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-51 206.8 144 77.1
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 8.1e-51 204.1 127 81.9
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.8e-50 203.0 133 79.7
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.8e-50 203.0 133 79.7
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 2.3e-50 202.6 133 79.7
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-50 202.6 133 79.7
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-50 202.6 133 79.7
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-50 202.6 133 79.7
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-50 202.6 133 79.7
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-50 202.6 133 79.7
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-49 199.9 133 78.9
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.6e-49 199.1 148 73.6
BolC2t10590H Brassica oleracea HOM05D001070 ORTHO05D002096 3.2e-47 192.2 97 99.0
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 5.4e-47 191.4 133 77.4
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 9.2e-47 190.7 135 75.6
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 4.6e-46 188.3 130 78.5
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 1.0e-45 187.2 110 90.0
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 2.3e-45 186.0 135 74.1
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.9e-45 185.3 133 74.4
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-44 183.7 135 73.3
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-44 183.7 120 77.5
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 5.2e-42 174.9 134 73.1
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.6e-41 172.6 100 90.0
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 4.1e-39 165.2 130 66.2
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 6.0e-38 161.4 109 80.7
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 5.1e-37 158.3 158 57.0
Nitab4.5_0023521g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 6.6e-37 157.9 88 87.5
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 8.6e-37 157.5 129 64.3
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.6e-36 154.1 82 92.7
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.1e-35 152.9 133 64.7
Hund22091 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.1e-35 152.9 130 60.8
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 4.7e-35 151.8 134 61.2
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 2.4e-34 149.4 104 77.9
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 3.1e-34 149.1 141 55.3
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 80 88.8
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 2.0e-33 146.4 87 85.1
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.0e-33 146.4 138 56.5
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.4e-33 145.2 168 53.0
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.8e-32 142.1 116 70.7
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.8e-32 142.1 159 51.6
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.2e-31 138.7 78 85.9
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 5.4e-31 138.3 130 57.7
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 1.6e-30 136.7 96 74.0
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 3.9e-29 132.1 104 72.1
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 7.3e-28 127.9 69 89.9
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 1.3e-27 127.1 69 89.9
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.6e-27 126.7 68 91.2
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 2.1e-27 126.3 68 89.7
MBI01_g06564_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D002096 3.6e-27 125.6 133 56.4
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 3.6e-27 125.6 123 53.7
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 6.2e-27 124.8 66 90.9
Lsat_1_v5_gn_6_14481 Lactuca sativa HOM05D001070 ORTHO05D002096 1.1e-26 124.0 151 49.0
HanXRQChr14g0428451 Helianthus annuus HOM05D001070 ORTHO05D002096 1.8e-26 123.2 69 87.0
HanXRQChr14g0428511 Helianthus annuus HOM05D001070 ORTHO05D002096 1.8e-26 123.2 69 87.0
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-26 123.2 134 56.7
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 4.0e-26 122.1 69 88.4
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 4.5e-25 118.6 70 85.7
Hund29395 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.4e-23 113.6 141 51.8
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.9e-23 113.2 139 48.2
HanXRQChr12g0376641 Helianthus annuus HOM05D001070 ORTHO05D002096 2.4e-23 112.8 63 87.3
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.4e-23 112.8 83 72.3
BraSC138t45529Z Brassica rapa HOM05D001070 ORTHO05D002096 5.4e-23 111.7 104 61.5
Medtr1g110440 Medicago truncatula HOM05D001070 ORTHO05D002096 7.1e-23 111.3 112 51.8
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 1.8e-21 106.7 69 82.6
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-21 106.3 100 64.0
MELO3C030628.2 Cucumis melo HOM05D001070 ORTHO05D002096 2.3e-21 106.3 64 81.2
Solyc01g017480.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.3e-20 102.1 72 73.6
Nitab4.5_0002691g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.4e-20 101.3 60 80.0
RcHm_v2.0_Chr4g0392791 Rosa chinensis HOM05D001070 ORTHO05D002096 7.4e-20 101.3 69 78.3
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.8e-19 99.4 52 94.2
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 6.2e-19 98.2 64 79.7
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 6.2e-19 98.2 53 90.6
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 3.1e-18 95.9 64 78.1
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 3.1e-18 95.9 64 78.1
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-18 95.9 58 86.2
Migut.D01388 Erythranthe guttata HOM05D001070 ORTHO05D002096 4.0e-18 95.5 134 49.3
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 6.9e-18 94.7 56 85.7
Nitab4.5_0004697g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.2e-17 94.0 52 88.5
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 4.5e-17 92.0 72 69.4
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.3e-16 90.5 52 88.5
Gohir.D05G248050 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.7e-16 90.1 50 84.0
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 2.9e-16 89.4 89 57.3
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.8e-16 89.0 72 68.1
BolC9t56919H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-16 88.6 89 57.3
Gorai.009G258900 Gossypium raimondii HOM05D001070 ORTHO05D002096 2.4e-15 86.3 43 90.7
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 5.5e-15 85.1 45 91.1
BraSC59t46532Z Brassica rapa HOM05D001070 ORTHO05D002096 2.1e-14 83.2 112 51.8
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.7e-14 82.8 51 80.4
Oeu011447.1 Olea europaea HOM05D001070 ORTHO05D002096 2.7e-14 82.8 54 77.8
HanXRQChr00c0379g0574331 Helianthus annuus HOM05D001070 ORTHO05D002096 3.5e-14 82.4 74 63.5
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 3.5e-14 82.4 74 63.5
HanXRQChr11g0321221 Helianthus annuus HOM05D001070 ORTHO05D002096 3.5e-14 82.4 74 63.5
HanXRQChr11g0333751 Helianthus annuus HOM05D001070 ORTHO05D002096 3.5e-14 82.4 74 63.5
HanXRQChr15g0465401 Helianthus annuus HOM05D001070 ORTHO05D002096 3.5e-14 82.4 74 63.5
HanXRQChr15g0465511 Helianthus annuus HOM05D001070 ORTHO05D002096 3.5e-14 82.4 74 63.5
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 3.5e-14 82.4 74 63.5
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 3.5e-14 82.4 74 63.5
CsaV3_2G013000 Cucumis sativus L. HOM05D001070 ORTHO05D002096 1.0e-13 80.9 104 50.0
Oeu011446.1 Olea europaea HOM05D001070 ORTHO05D002096 1.0e-13 80.9 54 75.9
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 3.0e-13 79.3 58 69.0
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 3.0e-13 79.3 58 69.0
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 3.9e-13 79.0 56 76.8
EL10Ac4g08269 Beta vulgaris HOM05D001070 ORTHO05D002096 5.1e-13 78.6 78 56.4
Nitab4.5_0000705g0080 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.7e-13 77.8 67 64.2
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-12 77.4 62 71.0
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.3e-12 75.9 129 40.3
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 3.3e-12 75.9 52 78.8
Hund11512 Selenicereus undatus HOM05D001070 ORTHO05D002096 5.6e-12 75.1 53 69.8
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 3.1e-10 69.3 87 48.3
HanXRQChr00c0703g0576891 Helianthus annuus HOM05D001070 ORTHO05D002096 2.6e-09 66.2 65 60.0
Gohir.1Z050666 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.4e-09 65.9 76 52.6
TPR.G34535 Trifolium pratense HOM05D001070 ORTHO05D002096 3.4e-09 65.9 52 61.5
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 4.5e-09 65.5 51 66.7
Hund03954 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.9e-08 62.8 56 60.7
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.1e-07 60.8 32 93.8
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 1.4e-07 60.5 34 85.3
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 1.4e-07 60.5 34 85.3
CAN.G1045.8 Capsicum annuum HOM05D001070 ORTHO05D002096 4.2e-07 58.9 31 90.3
CAN.G965.9 Capsicum annuum HOM05D001070 ORTHO05D002096 4.2e-07 58.9 31 90.3
Sabra06G0005100 Salix brachista HOM05D001711 ORTHO05D002847 9.3e-07 57.8 31 90.3
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.7e-06 56.2 47 68.1
Phvul.007G021600 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 4.6e-06 55.5 44 56.8


User provided reference genes

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