Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60632H Brassica oleracea HOM05D008377 ORTHO05D010569 2.4e-15 84.3 42 100.0
ATCG00700 Arabidopsis thaliana HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BNapus_Darmor_BZH_scaffold_253p00290 Brassica napus HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BNapus_Darmor_BZH_scaffold_57p00030 Brassica napus HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
C06p23090 Brassica napus HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BolC7t41714H Brassica oleracea HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BolSC29t60483H Brassica oleracea HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BolSC29t60603H Brassica oleracea HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BolSC35t60663H Brassica oleracea HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BolSC35t60736H Brassica oleracea HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BolSC46t61014H Brassica oleracea HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BolSC47t61081H Brassica oleracea HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BolSC49t61169H Brassica oleracea HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BraA06t25379Z Brassica rapa HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BraSC103t45450Z Brassica rapa HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BraSC138t45559Z Brassica rapa HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
BraSC59t46577Z Brassica rapa HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
CAN.G131.6 Capsicum annuum HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
CAN.G1513.9 Capsicum annuum HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
CAN.G1739.5 Capsicum annuum HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
DCAR_032513 Daucus carota HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
Hma1.2p1_2223F.1_g317403 Hydrangea macrophylla HOM05D008377 ORTHO05D010569 9.0e-15 82.4 42 97.6
AL7G50300 Arabidopsis lyrata HOM05D008377 ORTHO05D010569 2.0e-14 81.3 42 95.2
Gohir.A01G140181 Gossypium hirsutum HOM05D008377 ORTHO05D010569 2.6e-14 80.9 42 95.2
unitig_91.g26511 Utricularia gibba HOM05D000964 ORTHO05D003870 3.4e-14 80.5 42 92.9
C06p22900 Brassica napus HOM05D008377 ORTHO05D010569 4.5e-14 80.1 40 100.0
Medtr2g062940 Medicago truncatula HOM05D008377 ORTHO05D010569 4.5e-14 80.1 42 90.5
PSO548G0017 Papaver somniferum HOM05D008377 ORTHO05D010569 4.5e-14 80.1 42 95.2
Migut.I00398 Erythranthe guttata HOM05D008377 ORTHO05D010569 5.8e-14 79.7 42 92.9
vmacro22409 Vaccinium macrocarpon HOM05D008377 ORTHO05D010569 5.8e-14 79.7 42 92.9
Gohir.1Z078701 Gossypium hirsutum HOM05D008377 ORTHO05D010569 7.6e-14 79.3 42 95.2
Gohir.A09G043766 Gossypium hirsutum HOM05D008377 ORTHO05D010569 7.6e-14 79.3 42 95.2
Potri.007G062182 Populus trichocarpa HOM05D008377 ORTHO05D010569 7.6e-14 79.3 42 95.2
Potri.011G113700 Populus trichocarpa HOM05D008377 ORTHO05D010569 7.6e-14 79.3 42 95.2
Potri.019G028300 Populus trichocarpa HOM05D008377 ORTHO05D010569 7.6e-14 79.3 42 95.2
PGR111G0081 Punica granatum HOM05D008377 ORTHO05D010569 7.6e-14 79.3 42 95.2
BolC2t08917H Brassica oleracea HOM05D008377 ORTHO05D010569 1.3e-13 78.6 40 97.5
BraSC58t46436Z Brassica rapa HOM05D008377 ORTHO05D010569 2.2e-13 77.8 43 95.3
Nn4g25236 Nelumbo nucifera HOM05D008377 ORTHO05D010569 2.2e-13 77.8 40 97.5
Potri.011G074784 Populus trichocarpa HOM05D008377 ORTHO05D010569 2.2e-13 77.8 42 92.9
Glyma.U031425 Glycine max HOM05D008377 ORTHO05D010569 4.9e-13 76.6 42 90.5
CiPaw.10G124700 Carya illinoinensis HOM05D008377 ORTHO05D010569 6.4e-13 76.3 42 90.5
Gohir.A12G178625 Gossypium hirsutum HOM05D008377 ORTHO05D010569 6.4e-13 76.3 42 92.9
Gohir.A12G178660 Gossypium hirsutum HOM05D008377 ORTHO05D010569 6.4e-13 76.3 42 92.9
Potri.009G004950 Populus trichocarpa HOM05D008377 ORTHO05D010569 1.9e-12 74.7 40 92.5
CAN.G634.5 Capsicum annuum HOM05D008377 ORTHO05D010569 2.5e-12 74.3 42 85.7
Gohir.A05G326908 Gossypium hirsutum HOM05D008377 ORTHO05D010569 3.2e-12 73.9 42 88.1
CAN.G1263.26 Capsicum annuum HOM05D008377 ORTHO05D010569 5.5e-12 73.2 40 90.0
Gohir.D11G238201 Gossypium hirsutum HOM05D008377 ORTHO05D010569 9.3e-12 72.4 42 88.1
Dinv33424 Davidia involucrata HOM05D000421 ORTHO05D000855 1.2e-11 72.0 36 97.2
Pp3c21_5640 Physcomitrium patens HOM05D008377 ORTHO05D010569 1.6e-11 71.6 40 90.0
CAN.G2018.10 Capsicum annuum HOM05D008377 ORTHO05D010569 3.5e-11 70.5 42 83.3
Gorai.007G252000 Gossypium raimondii HOM05D008377 ORTHO05D010569 1.8e-10 68.2 42 81.0
Gohir.A06G115402 Gossypium hirsutum HOM05D008377 ORTHO05D010569 5.1e-10 66.6 38 86.8
Gohir.D09G048400 Gossypium hirsutum HOM05D008377 ORTHO05D010569 6.7e-10 66.2 40 87.5
Gorai.006G061700 Gossypium raimondii HOM05D008377 ORTHO05D010569 1.1e-09 65.5 40 87.5
SHI42879 Sapria himalayana HOM05D008377 ORTHO05D010569 8.2e-08 59.3 31 90.3
Nn314s46300 Nelumbo nucifera HOM05D008377 ORTHO05D010569 9.0e-07 55.8 42 71.4
Cfa021572 Carpinus fangiana HOM05D000964 ORTHO05D003870 2.0e-06 54.7 25 96.0
GSVIVG01021001001 Vitis vinifera HOM05D000755 ORTHO05D000642 4.5e-06 53.5 41 65.9


User provided reference genes

Program Settings