Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 3.2e-161 571.6 272 100.0
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 3.2e-161 571.6 272 100.0
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 3.2e-161 571.6 272 100.0
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 3.2e-161 571.6 272 100.0
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 6.2e-141 504.2 237 100.0
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 2.5e-126 455.7 266 85.7
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 1.4e-124 449.9 237 91.6
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 6.9e-116 421.0 197 100.0
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 6.7e-111 404.4 214 91.6
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 6.7e-111 404.4 214 91.6
BolSC29t60625H Brassica oleracea HOM05D008016 ORTHO05D010588 1.7e-77 293.5 134 100.0
BolSC44t60813H Brassica oleracea HOM05D008016 ORTHO05D010588 2.2e-77 293.1 139 97.1
BolSC49t61153H Brassica oleracea HOM05D008016 ORTHO05D010588 7.8e-59 231.5 135 83.7
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 1.1e-52 211.1 101 100.0
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 3.5e-43 179.5 190 56.3
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 1.9e-41 173.7 109 81.7
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 3.4e-38 162.9 112 75.0
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 3.0e-34 149.8 67 100.0
BNapus_Darmor_BZH_scaffold_69p00020 Brassica napus HOM05D008016 ORTHO05D010588 1.9e-33 147.1 67 100.0
CARHR282370 Cardamine hirsuta HOM05D008016 ORTHO05D010588 1.9e-33 147.1 67 100.0
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 9.6e-33 144.8 84 85.7
BolSC47t61058H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-31 141.4 64 100.0
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 1.3e-29 134.4 126 63.5
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 1.3e-29 134.4 126 63.5
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 1.3e-29 134.4 126 63.5
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 2.9e-29 133.3 66 92.4
BolSC44t60832H Brassica oleracea HOM05D008016 ORTHO05D010588 2.1e-27 127.1 81 75.3
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 6.0e-27 125.6 97 69.1
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 6.0e-27 125.6 97 69.1
BraSC179t45783Z Brassica rapa HOM05D008016 ORTHO05D004271 6.0e-27 125.6 88 76.1
arahy.Tifrunner.gnm1.ann1.VZYH4A Arachis hypogaea HOM05D008016 ORTHO05D010588 3.6e-24 116.3 92 65.2
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 4.8e-24 115.9 55 96.4
Gohir.D07G151450 Gossypium hirsutum HOM05D008016 ORTHO05D004271 4.8e-24 115.9 106 63.2
CsaV3_UNG196490 Cucumis sativus L. HOM05D008016 ORTHO05D010588 6.2e-24 115.5 79 68.4
BolSC45t60899H Brassica oleracea HOM05D008016 ORTHO05D004271 9.0e-23 111.7 56 98.2
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 4.9e-21 105.9 83 67.5
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 4.9e-21 105.9 83 67.5
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 1.9e-20 104.0 74 71.6
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.4e-20 103.6 49 93.9
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 4.2e-20 102.8 48 95.8
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 4.2e-20 102.8 57 86.0
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 7.1e-20 102.1 81 66.7
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 7.1e-20 102.1 81 66.7
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 1.6e-19 100.9 57 84.2
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 2.1e-19 100.5 87 63.2
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 2.1e-19 100.5 63 85.7
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 2.1e-19 100.5 63 85.7
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 2.7e-19 100.1 48 95.8
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 3.5e-19 99.8 48 93.8
C02p28730 Brassica napus HOM05D008016 ORTHO05D010588 6.0e-19 99.0 46 95.7
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.8e-18 97.4 69 69.6
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 3.0e-18 96.7 55 85.5
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 5.1e-18 95.9 56 85.7
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 6.7e-18 95.5 53 84.9
Lsat_1_v5_gn_4_147840 Lactuca sativa HOM05D008016 ORTHO05D010588 1.1e-17 94.7 43 97.7
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 3.3e-17 93.2 172 38.4
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 4.3e-17 92.8 55 80.0
Nitab4.5_0012234g0020 Nicotiana tabacum HOM05D008016 ORTHO05D010055 1.6e-16 90.9 46 89.1
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 2.8e-16 90.1 50 82.0
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 6.2e-16 89.0 44 88.6
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 6.2e-16 89.0 44 88.6
arahy.Tifrunner.gnm1.ann1.ZMH4QB Arachis hypogaea HOM05D001966 ORTHO05D010986 6.2e-16 89.0 44 88.6
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 8.1e-16 88.6 44 86.4
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 1.1e-15 88.2 91 56.0
Gohir.1Z049580 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.8e-15 87.4 81 60.5
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 1.8e-15 87.4 160 41.9
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 3.1e-15 86.7 88 55.7
Nitab4.5_0004137g0030 Nicotiana tabacum HOM05D008354 ORTHO05D010055 9.0e-15 85.1 40 92.5
Lalb_Chr17g0346961 Lupinus albus HOM05D008016 ORTHO05D010588 1.5e-14 84.3 40 95.0
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 2.6e-14 83.6 43 90.7
Nitab4.5_0001249g0070 Nicotiana tabacum HOM05D008016 ORTHO05D010588 4.5e-14 82.8 44 81.8
BolSC45t60919H Brassica oleracea HOM05D008016 ORTHO05D010588 1.7e-13 80.9 36 100.0
Nitab4.5_0005831g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 2.2e-13 80.5 40 90.0
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.9e-13 80.1 65 67.7
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 3.2e-12 76.6 58 74.1
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 5.5e-12 75.9 63 61.9
Nitab4.5_0001727g0120 Nicotiana tabacum HOM05D008016 ORTHO05D010055 2.7e-11 73.6 37 89.2
Oeu040617.1 Olea europaea HOM05D008016 ORTHO05D004271 2.7e-11 73.6 43 88.4
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 4.6e-11 72.8 52 73.1
arahy.Tifrunner.gnm1.ann1.54SFA9 Arachis hypogaea HOM05D008037 ORTHO05D004271 6.0e-11 72.4 53 69.8
Nitab4.5_0007400g0100 Nicotiana tabacum HOM05D008016 ORTHO05D004271 6.0e-11 72.4 102 43.1
RcHm_v2.0_Chr2g0095251 Rosa chinensis HOM05D008016 ORTHO05D004271 7.9e-11 72.0 40 90.0
Nitab4.5_0004841g0100 Nicotiana tabacum HOM05D008016 ORTHO05D010055 1.0e-10 71.6 38 86.8
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 3.9e-10 69.7 56 67.9
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 6.7e-10 68.9 49 71.4
DCAR_024575 Daucus carota HOM05D008354 ORTHO05D010055 4.3e-09 66.2 33 84.8
Lsat_1_v5_gn_4_68181 Lactuca sativa HOM05D008016 ORTHO05D010055 4.3e-09 66.2 69 50.7
BolSC49t61132H Brassica oleracea HOM05D001966 ORTHO05D010986 5.6e-09 65.9 28 100.0
CiPaw.14G028800 Carya illinoinensis HOM05D008016 ORTHO05D004271 2.8e-08 63.5 55 60.0
MD00G1140100 Malus domestica HOM05D008016 ORTHO05D004271 2.8e-08 63.5 34 88.2
CAN.G100.35 Capsicum annuum HOM05D008016 ORTHO05D010588 4.8e-08 62.8 30 86.7
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.8e-08 62.8 52 65.4
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 8.1e-08 62.0 35 80.0
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 8.1e-08 62.0 57 59.6
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 1.1e-07 61.6 55 63.6
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 3.1e-07 60.1 28 92.9
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 3.1e-07 60.1 28 92.9
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 4.0e-07 59.7 95 44.2
arahy.Tifrunner.gnm1.ann1.3JU9J0 Arachis hypogaea HOM05D009726 ORTHO05D010588 5.3e-07 59.3 77 45.5
BraSC58t46467Z Brassica rapa HOM05D008016 ORTHO05D010588 6.9e-07 58.9 47 61.7
arahy.Tifrunner.gnm1.ann1.R58SNE Arachis hypogaea HOM05D008016 ORTHO05D010055 9.0e-07 58.5 62 48.4
Thhalv10029308m.g Eutrema salsugineum HOM05D008354 ORTHO05D010055 1.5e-06 57.8 27 88.9
Gohir.A02G134102 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.5e-06 57.8 27 100.0
EL10Ac6g14592 Beta vulgaris HOM05D008354 ORTHO05D010055 2.6e-06 57.0 29 96.6
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 2.6e-06 57.0 45 68.9
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 3.4e-06 56.6 37 73.0
arahy.Tifrunner.gnm1.ann1.PRQI1Y Arachis hypogaea HOM05D008016 ORTHO05D010588 5.8e-06 55.8 41 61.0


User provided reference genes

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