Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60551H Brassica oleracea HOM05D000533 ORTHO05D010350 7.8e-33 143.3 76 100.0
BolSC49t61148H Brassica oleracea HOM05D000533 ORTHO05D010350 7.0e-26 120.2 79 87.3
MD08G1073600 Malus domestica HOM05D000533 ORTHO05D010350 1.6e-22 109.0 79 72.2
BolC5t34052H Brassica oleracea HOM05D000533 ORTHO05D010350 4.7e-22 107.5 64 90.6
BolC9t56911H Brassica oleracea HOM05D000533 ORTHO05D010350 6.2e-22 107.1 76 78.9
BolC2t10602H Brassica oleracea HOM05D000533 ORTHO05D010350 8.1e-22 106.7 68 85.3
BolSC29t60511H Brassica oleracea HOM05D000533 ORTHO05D010350 8.1e-22 106.7 68 85.3
BolSC35t60709H Brassica oleracea HOM05D000533 ORTHO05D010350 8.1e-22 106.7 68 85.3
BolSC37t60798H Brassica oleracea HOM05D000533 ORTHO05D010350 8.1e-22 106.7 68 85.3
BraSC138t45530Z Brassica rapa HOM05D000533 ORTHO05D010350 8.1e-22 106.7 68 85.3
BraSC143t45655Z Brassica rapa HOM05D000533 ORTHO05D010350 8.1e-22 106.7 68 85.3
BraSC25t45915Z Brassica rapa HOM05D000533 ORTHO05D010350 8.1e-22 106.7 68 85.3
BraSC59t46555Z Brassica rapa HOM05D000533 ORTHO05D010350 8.1e-22 106.7 68 85.3
BolSC35t60687H Brassica oleracea HOM05D000533 ORTHO05D010350 3.1e-21 104.8 62 91.9
ATCG01120 Arabidopsis thaliana HOM05D000533 ORTHO05D010350 6.8e-21 103.6 68 80.9
BolC7t43859H Brassica oleracea HOM05D000533 ORTHO05D010350 1.2e-20 102.8 68 82.4
CARHR282480 Cardamine hirsuta HOM05D000533 ORTHO05D010350 2.0e-20 102.1 68 80.9
Potri.012G027700 Populus trichocarpa HOM05D000533 ORTHO05D010350 2.6e-20 101.7 70 80.0
PGR111G0065 Punica granatum HOM05D000533 ORTHO05D010350 3.4e-20 101.3 72 79.2
Nn1g08630 Nelumbo nucifera HOM05D000533 ORTHO05D010350 4.4e-20 100.9 73 78.1
BolSC45t60904H Brassica oleracea HOM05D000533 ORTHO05D010350 5.8e-20 100.5 64 87.5
Lalb_Chr07g0191831 Lupinus albus HOM05D000533 ORTHO05D010350 5.8e-20 100.5 71 80.3
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-20 99.8 57 89.5
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-20 99.8 57 89.5
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-20 99.8 57 89.5
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-20 99.8 57 89.5
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-20 99.8 57 89.5
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-20 99.8 57 89.5
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 9.9e-20 99.8 57 89.5
Lalb_Chr03g0030911 Lupinus albus HOM05D000533 ORTHO05D010350 9.9e-20 99.8 71 80.3
Gohir.1Z050566 Gossypium hirsutum HOM05D000533 ORTHO05D010350 1.3e-19 99.4 57 86.0
DCAR_032543 Daucus carota HOM05D000533 ORTHO05D010350 2.2e-19 98.6 61 82.0
Gohir.A01G140394 Gossypium hirsutum HOM05D000533 ORTHO05D010350 2.2e-19 98.6 56 87.5
Gohir.D11G334200 Gossypium hirsutum HOM05D000533 ORTHO05D010350 2.2e-19 98.6 56 87.5
Lalb_Chr15g0080711 Lupinus albus HOM05D000533 ORTHO05D010350 2.2e-19 98.6 71 78.9
Lalb_Chr20g0108591 Lupinus albus HOM05D000533 ORTHO05D010350 2.9e-19 98.2 71 78.9
LjContig00318g0021062 Lotus japonicus HOM05D000533 ORTHO05D010350 3.7e-19 97.8 72 76.4
LjContig00319g0004235 Lotus japonicus HOM05D000533 ORTHO05D010350 3.7e-19 97.8 72 76.4
C09p40120 Brassica napus HOM05D000890 ORTHO05D000697 4.9e-19 97.4 62 83.9
Eucgr.C01838 Eucalyptus grandis HOM05D000533 ORTHO05D010350 4.9e-19 97.4 64 79.7
Gohir.A13G086380 Gossypium hirsutum HOM05D000533 ORTHO05D010350 6.4e-19 97.1 57 84.2
MD12G1237700 Malus domestica HOM05D000533 ORTHO05D010350 6.4e-19 97.1 67 73.1
Sed0000963 Sechium edule HOM05D000533 ORTHO05D010350 8.3e-19 96.7 59 83.1
MD09G1289300 Malus domestica HOM05D000533 ORTHO05D010350 1.1e-18 96.3 77 66.2
Gohir.D06G106350 Gossypium hirsutum HOM05D000533 ORTHO05D010350 1.9e-18 95.5 68 73.5
Gorai.006G055100 Gossypium raimondii HOM05D000533 ORTHO05D010350 1.9e-18 95.5 67 71.6
Gorai.011G221100 Gossypium raimondii HOM05D000533 ORTHO05D010350 1.9e-18 95.5 66 71.2
Gohir.1Z049594 Gossypium hirsutum HOM05D000533 ORTHO05D010350 2.4e-18 95.1 56 83.9
Nitab4.5_0006409g0070 Nicotiana tabacum HOM05D001070 ORTHO05D010350 4.1e-18 94.4 63 79.4
Oeu058352.1 Olea europaea HOM05D000533 ORTHO05D010350 5.4e-18 94.0 65 78.5
PGSC0003DMG400029905 Solanum tuberosum HOM05D000533 ORTHO05D010350 5.4e-18 94.0 56 83.9
Gohir.A04G053052 Gossypium hirsutum HOM05D000533 ORTHO05D010350 9.2e-18 93.2 56 83.9
CAN.G1470.7 Capsicum annuum HOM05D000533 ORTHO05D010350 2.1e-17 92.0 68 72.1
CAN.G965.2 Capsicum annuum HOM05D000533 ORTHO05D010350 2.1e-17 92.0 68 72.1
BolSC44t60827H Brassica oleracea HOM05D000533 ORTHO05D010350 2.7e-17 91.7 72 76.4
Gorai.013G128500 Gossypium raimondii HOM05D000533 ORTHO05D010350 2.7e-17 91.7 56 83.9
Gohir.D13G114450 Gossypium hirsutum HOM05D000533 ORTHO05D010350 3.5e-17 91.3 64 73.4
RcHm_v2.0_Chr3g0470821 Rosa chinensis HOM05D000533 ORTHO05D010350 7.8e-17 90.1 70 70.0
Gohir.D11G237260 Gossypium hirsutum HOM05D000533 ORTHO05D010350 1.3e-16 89.4 56 78.6
Medtr7g021690 Medicago truncatula HOM05D001070 ORTHO05D005132 3.0e-16 88.2 71 69.0
Medtr0002s0210 Medicago truncatula HOM05D000533 ORTHO05D010350 3.9e-16 87.8 60 70.0
Hund27629 Selenicereus undatus HOM05D001070 ORTHO05D005132 5.1e-16 87.4 67 68.7
Hund28852 Selenicereus undatus HOM05D001070 ORTHO05D005132 5.1e-16 87.4 67 68.7
Hund28975 Selenicereus undatus HOM05D001070 ORTHO05D005132 5.1e-16 87.4 67 68.7
Hund29088 Selenicereus undatus HOM05D001070 ORTHO05D005132 5.1e-16 87.4 67 68.7
Hund29432 Selenicereus undatus HOM05D001070 ORTHO05D005132 5.1e-16 87.4 67 68.7
Hund29500 Selenicereus undatus HOM05D001070 ORTHO05D005132 5.1e-16 87.4 67 68.7
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 5.1e-16 87.4 67 68.7
Medtr4g006090 Medicago truncatula HOM05D000533 ORTHO05D010350 1.1e-15 86.3 73 71.2
Medtr6g042190 Medicago truncatula HOM05D000533 ORTHO05D010350 3.3e-15 84.7 73 69.9
MD12G1214000 Malus domestica HOM05D000533 ORTHO05D010350 5.6e-15 84.0 60 70.0
SGA_v2.0_scaffold150G36658 Striga asiatica HOM05D000533 ORTHO05D010350 5.6e-15 84.0 64 67.2
HanXRQChr17g0560431 Helianthus annuus HOM05D000533 ORTHO05D010350 2.8e-14 81.6 52 80.8
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 2.8e-14 81.6 45 91.1
HanXRQChr00c0690g0576771 Helianthus annuus HOM05D000533 ORTHO05D010350 2.4e-13 78.6 73 65.8
Peaxi162Scf00147g00312 Petunia axillaris HOM05D000445 ORTHO05D010350 4.0e-13 77.8 59 69.5
Peaxi162Scf00030g02115 Petunia axillaris HOM05D000533 ORTHO05D010350 4.4e-12 74.3 57 68.4
Hund03919 Selenicereus undatus HOM05D000533 ORTHO05D010350 1.1e-10 69.7 61 63.9
Medtr1g041540 Medicago truncatula HOM05D000533 ORTHO05D001069 5.4e-10 67.4 50 74.0
MD12G1021800 Malus domestica HOM05D000533 ORTHO05D010350 1.3e-08 62.8 45 71.1
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-06 55.8 46 65.2
Phvul.001G058350 Phaseolus vulgaris HOM05D000533 ORTHO05D010350 2.1e-06 55.5 33 84.8
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 2.8e-06 55.1 51 54.9


User provided reference genes

Program Settings