Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 6.1e-51 203.8 96 100.0
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 3.0e-50 201.4 96 99.0
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 3.0e-50 201.4 96 99.0
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 8.8e-50 199.9 93 100.0
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 1.5e-49 199.1 96 97.9
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 2.6e-49 198.4 94 97.9
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 4.4e-49 197.6 92 100.0
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 4.4e-49 197.6 92 100.0
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 7.5e-49 196.8 94 96.8
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 9.8e-49 196.4 94 96.8
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 1.7e-48 195.7 91 100.0
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 1.1e-47 193.0 94 95.7
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 4.1e-47 191.0 94 92.6
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 4.1e-47 191.0 94 92.6
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 9.1e-47 189.9 94 91.5
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 9.1e-47 189.9 94 91.5
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.2e-46 189.5 94 91.5
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.2e-46 189.5 94 91.5
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 1.6e-46 189.1 94 92.6
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 1.6e-46 189.1 94 92.6
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-46 188.3 94 91.5
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-46 188.3 94 91.5
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-46 188.3 94 91.5
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-46 188.3 94 91.5
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-46 188.3 94 91.5
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-46 188.3 94 91.5
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-46 188.3 94 91.5
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 2.7e-46 188.3 94 91.5
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 2.7e-46 188.3 94 91.5
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 2.7e-46 188.3 94 91.5
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 2.7e-46 188.3 94 91.5
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 2.7e-46 188.3 94 91.5
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 3.5e-46 188.0 94 90.4
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 4.5e-46 187.6 94 90.4
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 4.5e-46 187.6 94 91.5
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 5.9e-46 187.2 94 91.5
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 5.9e-46 187.2 94 91.5
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 5.9e-46 187.2 94 91.5
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 5.9e-46 187.2 94 91.5
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 5.9e-46 187.2 94 91.5
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 5.9e-46 187.2 94 91.5
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.0e-45 186.4 94 90.4
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.3e-45 186.0 94 90.4
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.3e-45 185.3 91 92.3
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.9e-45 184.9 94 89.4
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 2.9e-45 184.9 94 90.4
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 2.9e-45 184.9 94 90.4
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.8e-45 184.5 94 90.4
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.6e-45 183.7 94 88.3
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.6e-45 183.3 92 91.3
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 8.6e-45 183.3 94 89.4
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 8.6e-45 183.3 94 89.4
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 8.6e-45 183.3 94 89.4
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 8.6e-45 183.3 94 89.4
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 8.6e-45 183.3 94 89.4
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 8.6e-45 183.3 94 88.3
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.1e-44 183.0 94 88.3
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.5e-44 182.6 94 88.3
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.5e-44 182.6 94 88.3
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 2.5e-44 181.8 94 88.3
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 3.3e-44 181.4 94 88.3
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 3.3e-44 181.4 94 88.3
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 3.3e-44 181.4 94 88.3
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 3.3e-44 181.4 94 88.3
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 3.3e-44 181.4 94 88.3
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 4.2e-44 181.0 94 87.2
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-43 179.5 84 98.8
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.2e-43 179.5 91 89.0
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 1.6e-43 179.1 94 86.2
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 2.1e-43 178.7 94 87.2
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 2.1e-43 178.7 94 87.2
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 2.1e-43 178.7 94 86.2
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.6e-43 177.9 94 85.1
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-43 177.9 94 84.0
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 4.7e-43 177.6 86 94.2
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 8.0e-43 176.8 94 86.2
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 8.0e-43 176.8 94 86.2
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 8.0e-43 176.8 91 87.9
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 1.4e-42 176.0 91 87.9
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 1.8e-42 175.6 94 86.2
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.7e-41 170.6 83 92.8
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 7.5e-41 170.2 94 83.0
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.8e-40 168.3 93 82.8
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 2.8e-40 168.3 86 90.7
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 7.0e-39 163.7 92 79.3
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 1.7e-37 159.1 91 79.1
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 2.9e-37 158.3 94 74.5
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 9.5e-36 153.3 91 80.2
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 2.3e-34 148.7 85 80.0
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 2.0e-33 145.6 72 93.1
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.9e-32 141.7 68 94.1
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 3.7e-32 141.4 92 72.8
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 3.7e-32 141.4 72 90.3
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.4e-32 140.6 74 86.5
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 8.3e-32 140.2 68 92.6
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 2.7e-30 135.2 73 84.9
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 3.5e-30 134.8 69 91.3
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 6.0e-30 134.0 65 93.8
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.0e-29 131.7 68 88.2
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 3.0e-29 131.7 94 69.1
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-29 131.3 66 89.4
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 1.9e-28 129.0 85 72.9
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.8e-27 125.2 65 86.2
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-23 113.2 54 100.0
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 3.2e-23 111.7 54 98.1
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 4.1e-23 111.3 53 100.0
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 4.1e-23 111.3 89 58.4
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 2.7e-22 108.6 53 98.1
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 7.8e-22 107.1 49 95.9
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 3.0e-21 105.1 66 74.2
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.2e-19 97.4 72 68.1
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 8.1e-19 97.1 74 67.6
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 1.1e-18 96.7 45 100.0
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.8e-18 95.9 47 87.2
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.8e-18 95.9 47 87.2
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 4.0e-18 94.7 46 87.0
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.2e-17 93.2 68 69.1
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 2.0e-17 92.4 68 69.1
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 3.4e-17 91.7 85 56.5
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 4.4e-17 91.3 48 87.5
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 4.4e-17 91.3 68 67.6
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 3.7e-16 88.2 64 62.5
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 6.4e-16 87.4 47 80.9
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.4e-16 87.4 46 87.0
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.9e-15 85.9 43 93.0
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 4.1e-15 84.7 45 84.4
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 2.3e-13 79.0 73 52.1
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 2.3e-13 79.0 61 62.3
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 1.1e-12 76.6 46 78.3
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 2.8e-11 72.0 47 68.1
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.7e-08 62.8 30 86.7
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 6.4e-08 60.8 28 89.3
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 4.2e-07 58.2 37 73.0
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 5.4e-07 57.8 25 96.0
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 2.7e-06 55.5 26 88.5
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 3.5e-06 55.1 75 49.3
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 6.0e-06 54.3 26 84.6
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 6.0e-06 54.3 26 84.6
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 6.0e-06 54.3 26 84.6


User provided reference genes

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