Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 2.3e-182 642.1 328 100.0
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 9.0e-179 630.2 329 98.8
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 9.0e-179 630.2 329 98.8
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 9.0e-179 630.2 329 98.8
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 9.0e-179 630.2 329 98.8
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 9.0e-179 630.2 329 98.8
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 4.5e-178 627.9 327 98.8
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 2.9e-177 625.2 329 98.2
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 2.9e-177 625.2 329 98.2
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 3.8e-177 624.8 329 97.9
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 3.8e-177 624.8 329 97.9
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 3.8e-177 624.8 329 97.9
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 3.8e-177 624.8 329 97.9
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 2.1e-167 592.4 329 92.1
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 4.2e-160 568.2 302 97.4
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.6e-129 464.5 330 73.0
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.6e-129 464.5 330 73.0
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 2.5e-128 462.6 239 97.1
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 2.6e-125 452.6 324 73.1
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 1.7e-121 439.9 326 73.0
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.8e-119 432.6 325 70.5
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.8e-119 432.6 325 70.5
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 8.1e-119 431.0 325 68.9
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 8.1e-119 431.0 325 68.9
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 8.1e-119 431.0 325 68.9
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 8.1e-119 431.0 325 68.9
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 8.9e-118 427.6 324 69.1
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 2.0e-117 426.4 331 69.5
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 2.0e-117 426.4 331 69.5
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 4.4e-117 425.2 326 69.0
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 4.4e-117 425.2 326 69.0
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 4.4e-117 425.2 326 69.0
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 4.4e-117 425.2 326 69.0
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 6.4e-116 421.4 326 68.4
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 9.2e-115 417.5 327 69.4
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 1.7e-113 413.3 331 68.9
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 6.6e-113 411.4 331 67.4
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 6.6e-113 411.4 326 66.9
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.5e-112 410.2 284 73.2
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 2.0e-109 399.8 329 66.6
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 3.4e-109 399.1 327 65.1
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-107 392.9 325 64.6
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 2.4e-107 392.9 338 64.2
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-106 390.2 289 70.6
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-106 390.2 330 63.6
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 3.1e-102 375.9 329 62.3
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 7.1e-99 364.8 277 69.3
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 2.7e-98 362.8 301 64.5
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 2.3e-97 359.8 199 97.0
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-94 349.0 325 59.7
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 2.6e-93 346.3 275 66.9
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 7.9e-90 334.7 325 57.2
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 6.6e-89 331.6 325 57.8
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 2.1e-87 326.6 280 61.1
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 4.6e-82 308.9 183 94.0
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 1.5e-80 303.9 280 58.9
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 7.6e-77 291.6 279 59.9
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 3.2e-75 286.2 144 99.3
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.8e-70 270.4 276 53.6
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.8e-70 270.4 276 53.6
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.8e-70 270.4 276 53.6
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.8e-70 270.4 276 53.6
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.8e-70 270.4 276 53.6
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.8e-68 262.7 284 50.7
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 8.5e-68 261.5 233 61.4
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 1.9e-67 260.4 229 66.4
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 7.2e-67 258.5 175 74.3
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 4.6e-66 255.8 187 69.5
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 5.1e-65 252.3 141 88.7
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 2.2e-63 246.9 183 68.3
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 8.2e-63 245.0 321 45.5
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.6e-61 240.0 260 54.2
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-60 236.9 177 68.4
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-60 236.9 177 68.4
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.5e-59 232.3 236 55.1
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.4e-56 222.6 177 68.9
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 7.4e-56 221.9 204 62.7
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 4.2e-51 206.1 188 61.2
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 2.3e-49 200.3 294 38.4
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.2e-49 199.1 109 81.7
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 6.7e-49 198.7 149 72.5
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-48 197.2 113 94.7
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 2.0e-48 197.2 191 56.5
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 3.7e-47 193.0 113 76.1
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.6e-45 187.6 296 38.5
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.3e-44 184.5 107 78.5
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 6.5e-44 182.2 182 55.5
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 6.5e-44 182.2 106 76.4
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.5e-43 181.0 185 56.8
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.2e-43 178.7 107 76.6
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.2e-42 177.9 91 87.9
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.2e-42 177.9 91 87.9
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.6e-42 177.6 166 62.0
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.1e-42 177.2 174 57.5
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.2e-40 171.4 276 40.9
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-40 170.6 186 52.2
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 6.3e-39 165.6 212 47.2
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 6.3e-39 165.6 124 64.5
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.2e-39 165.2 212 46.7
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-38 163.7 98 91.8
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 3.2e-35 153.3 130 66.2
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 3.2e-35 153.3 277 42.2
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.2e-34 151.4 80 80.0
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.0e-33 146.4 80 78.8
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 3.4e-32 143.3 165 48.5
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-31 141.0 117 64.1
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-31 141.0 74 81.1
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.1e-30 138.3 84 76.2
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 1.8e-30 137.5 257 42.0
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.2e-29 134.8 84 73.8
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-29 134.8 151 53.0
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.0e-28 131.7 70 84.3
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.7e-28 131.0 70 81.4
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.9e-27 127.5 183 48.6
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.2e-27 126.7 92 73.9
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-26 124.8 87 70.1
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 2.1e-26 124.0 81 69.1
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 3.6e-26 123.2 97 68.0
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 8.0e-26 122.1 87 69.0
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 3.4e-24 116.7 63 81.0
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.9e-23 112.8 67 76.1
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.6e-21 107.8 69 81.2
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-20 105.1 77 71.4
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 2.9e-20 103.6 103 57.3
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 3.8e-20 103.2 305 26.9
BolC2t10610H Brassica oleracea HOM05D005034 ORTHO05D006234 3.6e-18 96.7 59 89.8
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.6e-18 96.7 62 71.0
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 8.0e-18 95.5 76 69.7
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.0e-16 90.9 51 82.4
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 5.7e-16 89.4 42 85.7
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 9.8e-16 88.6 61 75.4
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-15 88.2 53 71.7
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 3.7e-15 86.7 95 54.7
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 4.9e-15 86.3 68 73.5
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 7.8e-13 79.0 49 85.7
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 7.3e-11 72.4 87 55.2
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 9.5e-11 72.0 50 72.0
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 2.8e-10 70.5 52 73.1
BolC7t43853H Brassica oleracea HOM05D005034 ORTHO05D006234 8.0e-10 68.9 51 84.3
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.2e-09 66.2 48 72.9
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.6e-08 63.9 54 57.4
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.9e-07 60.5 45 66.7
BolC9t56808H Brassica oleracea HOM05D005034 ORTHO05D106437 3.7e-07 60.1 31 96.8
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.9e-06 57.8 57 56.1


User provided reference genes

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