Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 8.4e-75 283.5 132 100.0
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 3.5e-73 278.1 132 98.5
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 2.3e-72 275.4 131 97.7
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 8.6e-72 273.5 133 97.7
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-71 272.7 132 97.0
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 3.3e-71 271.6 128 98.4
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 9.6e-71 270.0 132 95.5
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 9.6e-71 270.0 132 96.2
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 1.6e-70 269.2 132 95.5
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 2.1e-70 268.9 132 96.2
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 2.8e-70 268.5 132 95.5
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 2.8e-70 268.5 131 95.4
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 2.8e-70 268.5 131 95.4
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.6e-70 268.1 132 96.2
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 6.2e-70 267.3 132 95.5
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 6.2e-70 267.3 132 95.5
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 6.2e-70 267.3 132 95.5
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 8.1e-70 266.9 133 95.5
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 8.1e-70 266.9 133 95.5
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.4e-69 265.4 128 96.9
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 3.1e-69 265.0 132 94.7
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 5.2e-69 264.2 131 93.9
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 9.9e-68 260.0 133 93.2
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 2.9e-67 258.5 133 92.5
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 5.4e-66 254.2 131 91.6
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 7.1e-66 253.8 129 92.2
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 7.1e-66 253.8 129 92.2
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-65 253.1 133 91.7
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 2.1e-65 252.3 131 92.4
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 7.8e-65 250.4 123 93.5
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.6e-63 243.4 132 87.9
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 2.1e-62 242.3 123 92.7
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 8.1e-62 240.4 126 90.5
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 2.4e-61 238.8 133 88.0
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 2.6e-60 235.3 132 87.1
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 3.4e-60 235.0 118 94.1
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 3.4e-60 235.0 118 94.1
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 5.8e-60 234.2 130 83.1
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 1.7e-59 232.6 118 92.4
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.1e-58 229.9 123 89.4
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.1e-57 225.7 115 93.9
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 4.6e-57 224.6 127 84.3
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 7.4e-55 217.2 106 94.3
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.6e-55 216.9 106 95.3
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 6.2e-54 214.2 106 93.4
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.1e-54 213.8 106 92.5
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 1.1e-53 213.4 145 76.6
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.4e-53 212.2 106 92.5
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 2.4e-53 212.2 110 90.9
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.0e-53 211.5 132 80.3
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 1.5e-52 209.5 102 97.1
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.6e-52 208.8 106 92.5
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 3.4e-52 208.4 108 91.7
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 3.4e-52 208.4 108 91.7
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 7.6e-52 207.2 110 89.1
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 9.9e-52 206.8 109 89.9
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 6.4e-51 204.1 101 95.0
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 1.1e-50 203.4 126 81.0
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 6.7e-48 194.1 132 75.8
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 6.7e-48 194.1 97 94.8
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 4.3e-47 191.4 106 85.8
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 5.6e-47 191.0 118 80.5
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 1.3e-46 189.9 88 97.7
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.1e-45 186.8 99 87.9
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.1e-45 186.8 99 87.9
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-44 183.3 99 86.9
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-44 183.3 99 86.9
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-44 183.3 99 86.9
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 1.5e-44 183.0 90 93.3
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 1.0e-43 180.3 132 70.5
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.9e-43 178.7 90 95.6
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-42 176.4 90 91.1
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 4.2e-42 174.9 90 90.0
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 7.1e-42 174.1 90 90.0
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 1.8e-40 169.5 95 82.1
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 5.1e-40 167.9 107 80.4
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 2.5e-39 165.6 80 93.8
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 5.7e-39 164.5 92 88.0
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 4.8e-38 161.4 89 82.0
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-37 159.8 81 90.1
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-37 159.8 81 90.1
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-37 159.8 81 90.1
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-37 159.8 81 90.1
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-37 159.8 81 90.1
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 1.8e-37 159.5 87 83.9
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 9.0e-37 157.1 77 90.9
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 7.6e-36 154.1 80 92.5
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.0e-35 151.4 76 92.1
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 6.5e-35 151.0 80 86.2
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 6.5e-35 151.0 76 90.8
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.2e-34 148.7 92 85.9
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 9.3e-34 147.1 81 84.0
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 1.2e-33 146.7 80 85.0
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 3.6e-33 145.2 84 84.5
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 3.9e-32 141.7 67 94.0
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 3.9e-32 141.7 67 94.0
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 8.7e-32 140.6 89 76.4
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-31 139.8 67 98.5
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 2.5e-31 139.0 125 62.4
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.5e-31 139.0 71 90.1
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 3.3e-31 138.7 88 77.3
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 4.3e-31 138.3 96 75.0
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 7.4e-31 137.5 66 98.5
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 7.4e-31 137.5 66 98.5
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 1.3e-30 136.7 68 95.6
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.7e-30 135.2 93 76.3
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 8.2e-30 134.0 80 81.2
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 2.4e-29 132.5 66 95.5
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 3.1e-29 132.1 122 59.0
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 5.3e-29 131.3 66 95.5
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 2.0e-28 129.4 66 93.9
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 2.0e-28 129.4 66 93.9
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 7.7e-28 127.5 66 92.4
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 2.2e-27 125.9 56 98.2
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 5.0e-27 124.8 73 82.2
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 1.9e-26 122.9 67 91.0
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 4.2e-26 121.7 119 55.5
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 2.0e-23 112.8 123 52.8
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 2.6e-23 112.5 69 75.4
Sabra08G0089800 Salix brachista HOM05D000963 ORTHO05D004715 2.2e-22 109.4 92 62.0
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 3.7e-22 108.6 67 82.1
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 3.1e-21 105.5 49 93.9
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 1.5e-20 103.2 45 97.8
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 2.0e-20 102.8 67 77.6
Gohir.A01G139250 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-19 100.1 46 97.8
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 1.3e-19 100.1 43 97.7
BolSC43t60811H Brassica oleracea HOM05D000963 ORTHO05D004715 6.5e-19 97.8 46 100.0
TPR.G27622 Trifolium pratense HOM05D000963 ORTHO05D004715 1.9e-18 96.3 46 91.3
Oeu054713.1 Olea europaea HOM05D000963 ORTHO05D004715 3.2e-18 95.5 48 95.8
BraSC179t45779Z Brassica rapa HOM05D000963 ORTHO05D004715 1.6e-17 93.2 44 100.0
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 1.6e-17 93.2 53 86.8
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 2.1e-17 92.8 42 95.2
DCAR_017253 Daucus carota HOM05D000963 ORTHO05D004715 2.7e-17 92.4 58 77.6
FAN06G2610 Fragaria x ananassa HOM05D000963 ORTHO05D004715 6.7e-16 87.8 62 69.4
Oeu033793.1 Olea europaea HOM05D001982 ORTHO05D003938 8.8e-16 87.4 54 79.6
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 1.1e-15 87.0 57 71.9
Lj4g0000207 Lotus japonicus HOM05D000963 ORTHO05D004715 3.3e-15 85.5 41 97.6
Psat5g119040 Pisum sativum HOM05D000963 ORTHO05D004715 3.3e-15 85.5 84 58.3
arahy.Tifrunner.gnm1.ann1.HN8ZWX Arachis hypogaea HOM05D000963 ORTHO05D004715 4.8e-14 81.6 41 92.7
Thecc.09G087300 Theobroma cacao HOM05D000963 ORTHO05D004715 6.3e-14 81.3 43 93.0
Gorai.002G200300 Gossypium raimondii HOM05D000963 ORTHO05D004715 5.9e-12 74.7 35 91.4
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.9e-11 72.4 40 82.5
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 2.9e-11 72.4 40 82.5
Sc21g0003630 Simmondsia chinensis HOM05D000556 ORTHO05D000404 6.7e-08 61.2 45 71.1
Migut.N00577 Erythranthe guttata HOM05D000963 ORTHO05D004715 2.6e-07 59.3 51 68.6
arahy.Tifrunner.gnm1.ann1.QZA5BL Arachis hypogaea HOM05D000963 ORTHO05D004715 9.7e-07 57.4 37 70.3


User provided reference genes

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