Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 1.1e-29 132.5 63 100.0
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 1.1e-29 132.5 63 100.0
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 1.1e-29 132.5 63 100.0
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 1.8e-22 108.6 50 100.0
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 5.1e-22 107.1 50 98.0
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 2.5e-21 104.8 50 96.0
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 2.5e-21 104.8 50 96.0
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 3.3e-21 104.4 58 81.0
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 3.3e-21 104.4 50 94.0
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 3.3e-21 104.4 52 92.3
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 4.3e-21 104.0 50 94.0
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 4.3e-21 104.0 50 94.0
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 4.3e-21 104.0 50 94.0
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 4.3e-21 104.0 50 94.0
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 4.3e-21 104.0 50 94.0
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 4.3e-21 104.0 50 94.0
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 5.7e-21 103.6 50 94.0
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 5.7e-21 103.6 50 94.0
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 5.7e-21 103.6 50 94.0
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 1.3e-20 102.4 50 94.0
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 1.6e-20 102.1 49 93.9
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 8.2e-20 99.8 52 92.3
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 8.2e-20 99.8 52 92.3
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.1e-19 99.4 50 90.0
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 1.4e-19 99.0 50 90.0
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 1.8e-19 98.6 50 88.0
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.4e-19 98.2 50 88.0
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.4e-19 98.2 50 88.0
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.4e-19 98.2 50 88.0
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.4e-19 98.2 50 88.0
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.4e-19 98.2 50 88.0
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.4e-19 98.2 50 88.0
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.4e-19 98.2 50 88.0
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 4.1e-19 97.4 50 90.0
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 5.3e-19 97.1 50 90.0
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 5.3e-19 97.1 50 90.0
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 5.3e-19 97.1 50 90.0
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 5.3e-19 97.1 50 90.0
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 5.3e-19 97.1 50 90.0
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 5.3e-19 97.1 50 90.0
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 1.2e-18 95.9 50 88.0
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 1.2e-18 95.9 50 88.0
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 2.0e-18 95.1 50 88.0
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 2.0e-18 95.1 49 89.8
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 2.0e-18 95.1 52 86.5
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 2.6e-18 94.7 50 86.0
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 2.9e-17 91.3 51 86.3
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 2.9e-17 91.3 50 86.0
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 2.9e-17 91.3 50 86.0
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 2.9e-17 91.3 50 84.0
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 3.8e-17 90.9 50 84.0
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-16 89.0 50 82.0
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-16 88.2 45 86.7
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 3.2e-16 87.8 49 79.6
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 1.2e-15 85.9 52 84.6
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 1.6e-15 85.5 50 74.0
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 1.6e-15 85.5 46 82.6
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 3.6e-15 84.3 39 97.4
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 3.6e-15 84.3 39 97.4
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 3.6e-15 84.3 52 82.7
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 6.1e-15 83.6 50 80.0
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 7.9e-15 83.2 52 78.8
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 8.7e-14 79.7 53 71.7
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 8.7e-14 79.7 39 89.7
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 8.7e-14 79.7 50 74.0
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 1.5e-13 79.0 50 76.0
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 4.3e-13 77.4 48 77.1
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 1.3e-12 75.9 50 70.0
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.4e-10 67.8 32 96.9
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.4e-10 67.8 32 96.9
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.4e-10 67.8 32 96.9
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 1.3e-09 65.9 33 87.9
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 2.9e-09 64.7 49 65.3
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 6.5e-09 63.5 55 63.6
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 1.9e-08 62.0 50 62.0
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 9.4e-08 59.7 47 59.6
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.6e-07 58.9 42 69.0
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 3.6e-07 57.8 37 70.3
Gohir.D09G040060 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.6e-07 57.8 31 80.6
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 4.6e-07 57.4 44 61.4
Sed0026700 Sechium edule HOM05D001966 ORTHO05D007227 3.0e-06 54.7 41 63.4


User provided reference genes

Program Settings