Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-65 253.1 119 100.0
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 3.6e-53 211.5 119 86.6
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.5e-46 188.7 111 80.2
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 4.3e-46 188.0 101 89.1
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 7.3e-46 187.2 89 97.8
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 8.1e-45 183.7 89 96.6
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 1.2e-43 179.9 114 74.6
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 4.5e-43 177.9 89 92.1
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.8e-43 177.6 89 92.1
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.8e-43 177.6 89 92.1
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.8e-43 177.6 89 92.1
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 5.8e-43 177.6 89 92.1
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 7.6e-43 177.2 91 90.1
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 7.6e-43 177.2 91 90.1
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 1.3e-42 176.4 89 91.0
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 1.3e-42 176.4 93 87.1
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 2.2e-42 175.6 89 92.1
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 2.2e-42 175.6 89 89.9
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 2.2e-42 175.6 89 89.9
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 2.2e-42 175.6 89 89.9
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 2.9e-42 175.3 89 88.8
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.9e-42 175.3 89 91.0
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 3.8e-42 174.9 89 88.8
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 3.8e-42 174.9 89 89.9
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 3.8e-42 174.9 89 89.9
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 6.4e-42 174.1 93 87.1
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 6.4e-42 174.1 93 87.1
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 6.4e-42 174.1 93 87.1
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 6.4e-42 174.1 89 89.9
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.1e-41 173.3 90 86.7
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 1.9e-41 172.6 89 87.6
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 1.9e-41 172.6 89 87.6
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 2.4e-41 172.2 89 88.8
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 2.4e-41 172.2 90 86.7
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 3.2e-41 171.8 90 86.7
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 3.2e-41 171.8 90 86.7
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 3.2e-41 171.8 89 88.8
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 5.4e-41 171.0 89 87.6
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 9.3e-41 170.2 89 87.6
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 1.2e-40 169.9 89 87.6
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 1.2e-40 169.9 90 86.7
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 1.2e-40 169.9 90 86.7
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 1.2e-40 169.9 89 87.6
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.2e-40 169.9 89 85.4
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 1.6e-40 169.5 89 89.9
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 2.1e-40 169.1 90 86.7
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 2.7e-40 168.7 90 84.4
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 2.7e-40 168.7 90 84.4
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 4.6e-40 167.9 89 86.5
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 4.6e-40 167.9 89 86.5
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 6.0e-40 167.5 89 86.5
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 7.9e-40 167.2 87 87.4
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 7.9e-40 167.2 87 87.4
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 7.9e-40 167.2 87 87.4
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.3e-39 166.4 89 85.4
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 2.3e-39 165.6 87 86.2
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 6.7e-39 164.1 84 88.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 8.7e-39 163.7 83 90.4
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.1e-38 163.3 83 90.4
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 1.5e-38 162.9 89 84.3
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 2.5e-38 162.2 89 83.1
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 3.3e-38 161.8 83 89.2
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 4.3e-38 161.4 83 88.0
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 7.4e-38 160.6 87 85.1
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 9.6e-38 160.2 87 82.8
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 2.1e-37 159.1 89 80.9
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 2.1e-37 159.1 81 90.1
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 2.8e-37 158.7 90 78.9
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 3.7e-37 158.3 83 86.7
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.8e-37 157.9 89 83.1
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 9.0e-36 153.7 88 80.7
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 7.6e-35 150.6 87 78.2
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 7.6e-35 150.6 99 70.7
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.0e-34 150.2 91 76.9
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 3.8e-34 148.3 74 91.9
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 6.5e-34 147.5 90 76.7
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 6.5e-34 147.5 90 76.7
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 1.4e-33 146.4 74 89.2
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 1.4e-33 146.4 74 89.2
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 1.4e-33 146.4 74 89.2
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 2.5e-33 145.6 75 90.7
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 1.6e-32 142.9 72 91.7
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.3e-31 139.8 84 78.6
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.0e-31 138.7 83 78.3
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 8.7e-31 137.1 83 77.1
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 1.9e-30 136.0 68 91.2
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 1.6e-29 132.9 70 85.7
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 8.2e-29 130.6 69 85.5
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-28 129.8 65 89.2
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 4.1e-28 128.3 89 73.0
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 5.3e-28 127.9 90 72.2
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 6.9e-28 127.5 61 95.1
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.0e-26 123.6 59 93.2
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.1e-25 120.2 64 87.5
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.2e-25 118.2 64 87.5
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.2e-25 118.2 57 93.0
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 4.2e-25 118.2 64 85.9
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 4.6e-24 114.8 53 98.1
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 4.6e-24 114.8 59 86.4
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.3e-23 112.5 72 79.2
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 3.0e-23 112.1 71 76.1
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.5e-22 109.8 55 87.3
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.7e-21 105.1 72 72.2
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 4.8e-21 104.8 105 58.1
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 6.3e-21 104.4 50 94.0
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-20 103.6 89 59.6
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-20 103.6 89 59.6
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-20 103.6 89 59.6
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 9.0e-20 100.5 69 68.1
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 7.2e-17 90.9 49 83.7
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 2.7e-16 89.0 44 90.9
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 3.0e-15 85.5 87 50.6
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 5.1e-15 84.7 86 60.5
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.5e-14 83.2 41 87.8
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-14 81.3 66 60.6
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 7.4e-14 80.9 48 81.2
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 1.8e-12 76.3 37 91.9
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-12 76.3 37 91.9
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 5.3e-12 74.7 39 84.6
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 1.2e-11 73.6 42 81.0
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 2.9e-10 68.9 53 62.3
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.1e-09 67.0 36 83.3
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 1.2e-08 63.5 32 87.5
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 4.7e-08 61.6 68 44.1
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 2.3e-07 59.3 39 74.4
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 5.1e-07 58.2 30 86.7
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 5.1e-07 58.2 30 86.7
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 5.1e-07 58.2 30 86.7
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.6e-06 55.8 41 63.4
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 5.7e-06 54.7 27 88.9
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.7e-06 54.7 31 80.6
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 7.4e-06 54.3 30 80.0


User provided reference genes

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