Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC28t60431H Brassica oleracea HOM05D010793 ORTHO05D011945 6.5e-140 500.7 258 100.0
BraSC177t45755Z Brassica rapa HOM05D010793 ORTHO05D011945 2.4e-134 482.3 256 97.7
BraSC48t46343Z Brassica rapa HOM05D010793 ORTHO05D011945 2.4e-134 482.3 256 97.7
BolSC28t60327H Brassica oleracea HOM05D010793 ORTHO05D011945 2.7e-125 452.2 259 92.7
BcaC08g43717 Brassica carinata HOM05D010793 ORTHO05D011945 7.5e-120 434.1 286 82.9
BcaB06g27867 Brassica carinata HOM05D010793 ORTHO05D011945 2.3e-100 369.4 282 74.1
ATMG01090 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 7.6e-72 274.6 275 62.5
CARHR283360 Cardamine hirsuta HOM05D010793 ORTHO05D011945 2.2e-71 273.1 287 59.9
AT2G07777 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 3.8e-71 272.3 275 62.2
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 3.5e-69 265.8 267 59.2
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 3.5e-69 265.8 267 59.2
Aa31csc553G30 Aethionema arabicum HOM05D010793 ORTHO05D011945 2.2e-63 246.5 160 81.2
BraSC48t46293Z Brassica rapa HOM05D010793 ORTHO05D011945 6.9e-57 224.9 129 90.7
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 4.6e-37 159.1 158 64.6
BraSC159t45718Z Brassica rapa HOM05D002965 ORTHO05D011945 6.1e-37 158.7 158 64.6
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 1.4e-36 157.5 160 61.2
BolC1t03449H Brassica oleracea HOM05D010793 ORTHO05D011945 6.9e-33 145.2 101 80.2
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 1.7e-31 140.6 156 60.3
CARHR283030 Cardamine hirsuta HOM05D002965 ORTHO05D011945 2.0e-24 117.1 166 50.6
ATMG00670 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 1.2e-21 107.8 138 54.3
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 3.0e-20 103.2 95 64.2
ATMG01020 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 3.0e-20 103.2 95 64.2
Aa31csc464G90 Aethionema arabicum HOM05D002965 ORTHO05D011945 1.5e-19 100.9 138 50.7
BraSC54t46356Z Brassica rapa HOM05D010793 ORTHO05D011945 2.0e-19 100.5 55 98.2
Thhalv10022998m.g Eutrema salsugineum HOM05D002965 ORTHO05D011945 9.7e-19 98.2 127 53.5
CARHR283270 Cardamine hirsuta HOM05D002965 ORTHO05D011945 1.0e-12 78.2 150 40.0
Psat5g192720 Pisum sativum HOM05D010793 ORTHO05D011945 8.8e-12 75.1 79 49.4
BolSC28t60385H Brassica oleracea HOM05D010793 ORTHO05D001825 1.5e-11 74.3 45 84.4
BolSC28t60419H Brassica oleracea HOM05D001750 ORTHO05D001825 1.5e-11 74.3 50 76.0
BraSC224t45818Z Brassica rapa HOM05D001750 ORTHO05D001825 1.5e-11 74.3 50 76.0
BraSC77t46634Z Brassica rapa HOM05D001750 ORTHO05D001825 1.5e-11 74.3 50 76.0
arahy.Tifrunner.gnm1.ann1.KJ11LV Arachis hypogaea HOM05D001750 ORTHO05D001825 2.0e-11 73.9 50 72.0
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 2.6e-11 73.6 50 74.0
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 2.6e-11 73.6 47 83.0
FvH4_6g34420 Fragaria vesca HOM05D001750 ORTHO05D001825 4.4e-11 72.8 50 74.0
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 4.4e-11 72.8 50 74.0
MBI06_g25392_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 4.4e-11 72.8 50 74.0
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 5.7e-11 72.4 50 72.0
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 5.7e-11 72.4 50 72.0
TPR.G18545 Trifolium pratense HOM05D001750 ORTHO05D001825 5.7e-11 72.4 50 72.0
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 7.5e-11 72.0 50 70.0
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 2.8e-10 70.1 50 70.0
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 2.8e-10 70.1 50 68.0
SHI35587 Sapria himalayana HOM05D008193 ORTHO05D010324 4.8e-10 69.3 50 68.0
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 1.8e-09 67.4 50 68.0
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 2.9e-07 60.1 79 53.2
Lalb_Chr02g0153691 Lupinus albus HOM05D001750 ORTHO05D001825 6.5e-07 58.9 50 54.0
BcaC05g26886 Brassica carinata HOM05D002965 ORTHO05D011945 1.1e-06 58.2 80 51.2
Sc04g0005530 Simmondsia chinensis HOM05D010793 ORTHO05D011945 5.5e-06 55.8 74 40.5


User provided reference genes

Program Settings