Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 6.9e-229 797.0 406 100.0
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 4.5e-228 794.3 406 99.8
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 5.9e-228 793.9 405 99.8
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.4e-221 772.7 405 96.0
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.5e-220 769.2 406 97.5
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 5.9e-220 767.3 405 97.3
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.7e-217 758.4 405 94.3
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 8.8e-216 753.4 405 93.3
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 7.4e-215 750.4 405 93.1
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 2.4e-213 745.3 405 92.3
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 9.1e-213 743.4 406 94.1
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 9.1e-213 743.4 406 92.9
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.3e-211 739.6 405 91.4
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-208 729.6 406 91.6
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.4e-208 729.6 406 91.6
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.4e-208 729.6 406 91.6
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.1e-207 726.5 406 89.9
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 2.0e-207 725.7 407 91.4
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 8.2e-206 720.3 407 90.9
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 3.8e-195 684.9 407 83.5
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 2.0e-172 609.4 405 75.6
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 7.8e-172 607.4 401 74.1
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 8.0e-169 597.4 405 72.8
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.4e-168 596.7 404 72.0
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.8e-168 596.3 391 74.4
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.8e-168 596.3 404 72.5
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.1e-168 595.5 391 74.2
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 4.0e-168 595.1 403 72.7
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.9e-168 594.0 391 73.7
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 2.6e-167 592.4 402 72.9
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.4e-167 592.0 389 74.3
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 3.4e-167 592.0 408 73.3
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 4.4e-167 591.7 402 72.1
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 4.4e-167 591.7 389 74.3
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 5.8e-167 591.3 408 71.1
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 7.5e-167 590.9 402 73.4
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 9.8e-167 590.5 408 72.5
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.3e-166 590.1 403 72.0
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.3e-166 590.1 403 72.0
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.7e-166 589.7 389 74.0
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 2.2e-166 589.3 411 70.6
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 2.2e-166 589.3 402 73.1
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.1e-165 587.0 394 72.1
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.2e-165 585.5 401 71.8
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 4.1e-165 585.1 408 71.3
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 7.0e-165 584.3 394 73.9
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.5e-164 582.0 401 71.6
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.6e-164 581.6 394 73.9
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.0e-163 580.5 404 70.5
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.0e-163 580.5 401 71.1
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 3.0e-163 578.9 394 73.4
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.9e-163 578.6 394 72.1
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.6e-163 577.8 394 73.1
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.1e-162 577.0 394 73.1
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.1e-162 577.0 394 71.6
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.9e-162 576.2 394 73.1
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 3.3e-162 575.5 393 73.5
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 5.6e-162 574.7 397 69.8
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 9.5e-162 573.9 394 72.8
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 2.1e-161 572.8 393 72.5
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 2.8e-161 572.4 402 69.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.8e-161 572.4 404 71.5
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.7e-161 571.6 394 71.3
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.1e-161 570.9 394 71.3
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 8.1e-161 570.9 402 69.9
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.1e-160 570.5 402 70.6
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.4e-160 570.1 401 69.8
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.8e-160 569.7 401 70.1
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.3e-160 569.3 401 70.8
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.1e-160 568.9 402 70.4
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 6.8e-160 567.8 392 71.2
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 8.9e-160 567.4 408 68.9
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.2e-159 567.0 395 70.9
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.6e-159 565.8 401 69.8
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 3.4e-159 565.5 471 61.8
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.4e-159 565.1 393 71.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 7.5e-159 564.3 399 68.2
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.2e-158 562.8 394 70.3
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 3.7e-158 562.0 394 69.5
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 3.7e-158 562.0 394 70.3
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 4.9e-158 561.6 398 69.3
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.9e-157 559.7 404 69.6
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 2.4e-157 559.3 402 69.7
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 2.4e-157 559.3 393 71.5
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.4e-157 559.3 404 69.6
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 4.1e-157 558.5 394 69.8
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.4e-157 558.1 412 68.2
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 7.1e-157 557.8 406 68.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 9.2e-157 557.4 397 69.3
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.2e-156 557.0 401 68.1
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.2e-156 557.0 409 68.2
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.2e-156 557.0 406 68.7
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.6e-156 556.6 400 70.2
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 2.1e-156 556.2 406 68.5
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.1e-156 556.2 397 69.0
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.1e-156 556.2 401 69.8
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.7e-156 555.8 387 71.8
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.7e-156 555.8 392 71.7
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.5e-156 555.4 402 69.9
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 7.8e-156 554.3 422 66.1
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.0e-155 552.4 399 68.9
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.6e-155 551.2 400 68.0
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 6.6e-155 551.2 436 64.7
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 4.3e-154 548.5 408 66.4
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 5.6e-154 548.1 395 68.4
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 9.5e-154 547.4 391 69.1
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.2e-153 547.0 401 67.3
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.8e-153 545.8 408 66.2
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.6e-153 545.4 441 63.7
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.7e-153 545.0 396 67.9
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.4e-152 542.7 394 69.0
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.2e-151 540.4 409 66.5
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 4.9e-150 535.0 407 66.6
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.2e-149 530.8 457 61.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.2e-148 530.4 402 68.2
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.6e-148 530.0 430 63.7
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 5.1e-147 525.0 390 66.4
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.5e-146 523.5 362 71.3
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.6e-143 512.7 388 64.9
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 5.8e-143 511.5 403 64.0
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 5.4e-141 505.0 389 63.5
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.9e-138 496.5 470 57.9
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.9e-138 496.5 411 60.8
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 9.3e-133 477.6 391 62.4
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 4.8e-129 465.3 395 60.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.4e-128 463.8 401 57.4
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.3e-128 461.8 399 59.4
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 9.9e-127 457.6 384 59.9
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.3e-123 447.2 327 68.8
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 8.7e-123 444.5 285 75.1
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.2e-111 407.5 317 65.3
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 3.4e-111 406.0 309 67.3
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 8.8e-99 364.8 219 80.8
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 7.0e-96 355.1 371 49.3
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.5e-95 352.8 388 47.2
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.1e-88 329.3 199 79.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 2.9e-78 296.6 195 72.3
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 9.8e-58 228.4 194 60.3
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.2e-44 184.9 111 78.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 6.4e-41 172.6 117 70.1
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 2.7e-23 114.0 94 60.6
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 4.3e-21 106.7 83 62.7
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.1e-20 104.4 71 64.8
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 2.1e-20 104.4 93 54.8
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 9.9e-18 95.5 79 57.0
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.4e-16 90.9 83 56.6
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.5e-07 60.5 38 76.3
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.8e-06 58.2 222 26.1


User provided reference genes

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