Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 5.4e-50 200.7 100 100.0
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 5.4e-50 200.7 100 100.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 5.6e-39 164.1 92 92.4
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.4e-37 159.5 92 90.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 4.4e-36 154.5 92 88.0
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.4e-34 149.4 92 88.0
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.4e-34 149.4 92 88.0
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 5.4e-34 147.5 92 87.0
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 2.7e-33 145.2 92 85.9
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.6e-33 144.4 90 86.7
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 2.1e-30 135.6 92 81.5
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.8e-30 135.2 92 81.5
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 6.2e-30 134.0 87 82.8
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.1e-29 131.7 93 77.4
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.4e-28 128.3 92 79.3
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.4e-28 128.3 92 79.3
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.5e-23 112.8 77 77.9
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.8e-22 108.6 98 70.4
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.8e-20 100.9 81 71.6
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 6.0e-17 90.9 92 55.4
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 7.9e-17 90.5 86 60.5
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 3.9e-16 88.2 93 55.9
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 8.7e-16 87.0 83 54.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-15 86.7 90 55.6
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.5e-15 86.3 80 61.2
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.9e-15 85.9 84 56.0
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.9e-15 85.9 88 55.7
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 4.3e-15 84.7 83 53.0
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 7.4e-15 84.0 94 53.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 7.4e-15 84.0 87 55.2
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 9.6e-15 83.6 84 53.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.8e-14 82.0 90 56.7
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.8e-14 81.3 92 54.3
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 6.2e-14 80.9 80 61.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.2e-14 80.9 80 61.2
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 8.1e-14 80.5 74 58.1
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.1e-14 80.5 78 51.3
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.1e-13 80.1 98 49.0
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.4e-13 79.7 81 54.3
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 1.4e-13 79.7 86 54.7
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.8e-13 79.3 97 50.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.8e-13 79.3 79 58.2
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.8e-13 79.3 81 54.3
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.4e-13 79.0 84 53.6
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.4e-13 79.0 98 50.0
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.1e-13 78.6 86 51.2
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.1e-13 78.6 79 58.2
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 4.0e-13 78.2 90 50.0
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 9.0e-13 77.0 89 49.4
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.0e-13 77.0 79 57.0
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 9.0e-13 77.0 89 50.6
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.2e-12 76.6 79 53.2
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.5e-12 76.3 90 46.7
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.5e-12 76.3 89 53.9
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.6e-12 75.5 74 56.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.6e-12 75.5 88 50.0
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 3.4e-12 75.1 81 50.6
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 3.4e-12 75.1 75 57.3
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.4e-12 75.1 91 49.5
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.5e-12 74.7 86 51.2
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.5e-12 74.7 103 43.7
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.5e-12 74.7 74 56.8
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 4.5e-12 74.7 81 46.9
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.6e-12 73.9 103 43.7
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.6e-12 73.9 103 43.7
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.6e-12 73.9 101 44.6
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 7.6e-12 73.9 79 46.8
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 7.6e-12 73.9 79 51.9
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 7.6e-12 73.9 74 56.8
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 7.6e-12 73.9 89 51.7
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 7.6e-12 73.9 86 53.5
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.0e-11 73.6 81 50.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.7e-11 72.8 97 46.4
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.9e-11 72.0 86 51.2
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 4.9e-11 71.2 91 50.5
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 6.5e-11 70.9 75 57.3
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 6.5e-11 70.9 80 51.2
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.4e-11 70.5 74 47.3
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 8.4e-11 70.5 85 48.2
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 8.4e-11 70.5 91 53.8
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.1e-10 70.1 83 49.4
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.1e-10 70.1 80 51.2
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.4e-10 69.7 81 49.4
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.4e-10 69.7 81 51.9
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.9e-10 69.3 84 47.6
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.9e-10 69.3 98 48.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.5e-10 68.9 88 46.6
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.5e-10 68.9 94 47.9
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 2.5e-10 68.9 82 50.0
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.5e-10 68.9 81 50.6
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.2e-10 68.2 78 48.7
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.2e-10 68.2 72 47.2
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 7.1e-10 67.4 70 52.9
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-09 66.6 71 49.3
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.6e-09 66.2 73 50.7
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.6e-09 66.2 73 50.7
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.6e-09 66.2 75 49.3
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.1e-09 65.9 81 49.4
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 2.1e-09 65.9 86 47.7
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.7e-09 65.5 82 46.3
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.7e-09 65.5 80 48.8
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 3.5e-09 65.1 82 46.3
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 7.9e-09 63.9 83 44.6
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.9e-09 63.9 77 49.4
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.9e-09 63.9 77 49.4
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.8e-08 62.8 70 51.4
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.3e-08 62.4 83 43.4
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.3e-08 62.4 93 44.1
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.3e-08 62.4 93 44.1
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 3.0e-08 62.0 74 47.3
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 3.0e-08 62.0 93 40.9
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.0e-08 62.0 84 45.2
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 3.9e-08 61.6 72 44.4
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 5.1e-08 61.2 55 54.5
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 8.7e-08 60.5 71 45.1
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.1e-07 60.1 76 48.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.5e-07 59.7 84 42.9
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.5e-07 59.7 74 44.6
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.9e-07 59.3 71 45.1
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.9e-07 59.3 87 42.5
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.9e-07 59.3 81 45.7
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.9e-07 59.3 83 44.6
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.5e-07 58.9 72 45.8
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.5e-07 58.9 70 50.0
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.3e-07 58.5 73 43.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 4.3e-07 58.2 73 47.9
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.3e-07 58.2 87 41.4
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 4.3e-07 58.2 80 43.8
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.7e-07 57.8 81 44.4
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.7e-07 57.8 84 41.7
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.4e-07 57.4 73 47.9
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 9.6e-07 57.0 75 45.3
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 9.6e-07 57.0 91 41.8
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.6e-06 56.2 116 37.1
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.6e-06 56.2 82 46.3
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.1e-06 55.8 71 47.9
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.1e-06 55.8 43 58.1
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 3.7e-06 55.1 88 43.2
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 3.7e-06 55.1 71 42.3
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 4.8e-06 54.7 82 41.5
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 4.8e-06 54.7 57 47.4
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 6.2e-06 54.3 95 34.7
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 8.2e-06 53.9 42 57.1


User provided reference genes

Program Settings