Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t57740H Brassica oleracea HOM05D011861 ORTHO05D027663 2.6e-67 258.5 119 100.0
C09p48910 Brassica napus HOM05D011861 ORTHO05D027663 4.0e-60 234.6 118 93.2
BcaB08g35996 Brassica carinata HOM05D011861 ORTHO05D027663 3.7e-29 131.7 77 83.1
BcaC04g20003 Brassica carinata HOM05D011861 ORTHO05D032220 1.2e-19 100.1 75 66.7
C09p48930 Brassica napus HOM05D011861 ORTHO05D032220 1.2e-19 100.1 75 66.7
BcaB08g35994 Brassica carinata HOM05D011861 ORTHO05D011036 3.4e-19 98.6 77 64.9
BolC9t57743H Brassica oleracea HOM05D011861 ORTHO05D032220 2.5e-17 92.4 66 68.2
C01p31410 Brassica napus HOM05D011861 ORTHO05D032435 1.1e-14 83.6 73 58.9
C01p32090 Brassica napus HOM05D011861 ORTHO05D023701 1.3e-13 80.1 41 85.4
BcaC09g50570 Brassica carinata HOM05D001636 ORTHO05D040027 4.8e-13 78.2 117 37.6
BolC1t03077H Brassica oleracea HOM05D011861 ORTHO05D032435 1.1e-12 77.0 56 66.1
CARHR113000 Cardamine hirsuta HOM05D001456 ORTHO05D011036 1.8e-12 76.3 56 66.1
BcaC09g49909 Brassica carinata HOM05D011861 ORTHO05D032435 1.5e-11 73.2 71 56.3
AT5G39640 Arabidopsis thaliana HOM05D001636 ORTHO05D023701 5.9e-11 71.2 49 73.5
Carub.0007s3604 Capsella rubella HOM05D001456 ORTHO05D023701 1.0e-10 70.5 56 64.3
BcaC02g09873 Brassica carinata HOM05D001456 ORTHO05D032772 1.4e-09 66.6 52 65.4
BolC4t25235H Brassica oleracea HOM05D001456 ORTHO05D011036 1.4e-09 66.6 52 65.4
AL3G38360 Arabidopsis lyrata HOM05D001636 ORTHO05D018456 4.2e-09 65.1 58 56.9
BcaB06g29167 Brassica carinata HOM05D001636 ORTHO05D009134 4.2e-09 65.1 58 56.9
Carub.0008s0675 Capsella rubella HOM05D001636 ORTHO05D013186 2.1e-08 62.8 90 44.4
Carub.0002s0629 Capsella rubella HOM05D001636 ORTHO05D013186 2.7e-08 62.4 51 60.8
BcaB07g32632 Brassica carinata HOM05D001456 ORTHO05D011036 4.7e-08 61.6 57 59.6
Thhalv10017769m.g Eutrema salsugineum HOM05D001456 ORTHO05D011036 7.9e-08 60.8 50 56.0
Thhalv10017671m.g Eutrema salsugineum HOM05D001636 ORTHO05D011317 1.0e-07 60.5 50 52.0
Thhalv10024069m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 1.0e-07 60.5 55 58.2
AL5G10320 Arabidopsis lyrata HOM05D001456 ORTHO05D001571 1.4e-07 60.1 77 42.9
BcaNung01309 Brassica carinata HOM05D001456 ORTHO05D031996 1.4e-07 60.1 81 40.7
BolC1t00009H Brassica oleracea HOM05D001456 ORTHO05D031996 1.4e-07 60.1 81 40.7
BcaB07g32631 Brassica carinata HOM05D013484 ORTHO05D094299 1.8e-07 59.7 58 53.4
C08p49410 Brassica napus HOM05D001456 ORTHO05D011036 1.8e-07 59.7 52 53.8
BolC8t52477H Brassica oleracea HOM05D001456 ORTHO05D011036 1.8e-07 59.7 52 53.8
Carub.0001s0454 Capsella rubella HOM05D001636 ORTHO05D013186 1.8e-07 59.7 88 40.9
BcaC01g00880 Brassica carinata HOM05D001456 ORTHO05D011036 2.3e-07 59.3 52 50.0
C03p85540 Brassica napus HOM05D001456 ORTHO05D002799 2.3e-07 59.3 52 50.0
C04p00350 Brassica napus HOM05D001636 ORTHO05D018456 2.3e-07 59.3 58 55.2
BolC3t18612H Brassica oleracea HOM05D001636 ORTHO05D009134 2.3e-07 59.3 127 35.4
BolC3t20841H Brassica oleracea HOM05D001456 ORTHO05D002799 2.3e-07 59.3 52 50.0
BolC4t21677H Brassica oleracea HOM05D001636 ORTHO05D018456 2.3e-07 59.3 58 55.2
Carub.0007s3606 Capsella rubella HOM05D001456 ORTHO05D011036 2.3e-07 59.3 79 44.3
AT3G62210 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 3.0e-07 58.9 77 41.6
BcaC05g27118 Brassica carinata HOM05D001636 ORTHO05D027512 3.0e-07 58.9 58 53.4
C05p29980 Brassica napus HOM05D001636 ORTHO05D027512 3.0e-07 58.9 58 53.4
BolC5t31733H Brassica oleracea HOM05D001636 ORTHO05D027512 3.0e-07 58.9 58 53.4
BraA05t18996Z Brassica rapa HOM05D001636 ORTHO05D018456 3.0e-07 58.9 58 55.2
Carub.0001s4175 Capsella rubella HOM05D001636 ORTHO05D013186 3.0e-07 58.9 52 57.7
Carub.0006s0379 Capsella rubella HOM05D001636 ORTHO05D009134 3.0e-07 58.9 52 57.7
CARHR274920 Cardamine hirsuta HOM05D001456 ORTHO05D002799 3.0e-07 58.9 73 43.8
BcaC01g02791 Brassica carinata HOM05D001636 ORTHO05D009134 3.9e-07 58.5 75 41.3
C01p00030 Brassica napus HOM05D001456 ORTHO05D031996 3.9e-07 58.5 88 39.8
C03p60230 Brassica napus HOM05D001636 ORTHO05D009134 3.9e-07 58.5 75 41.3
BolC3t18292H Brassica oleracea HOM05D001636 ORTHO05D009134 3.9e-07 58.5 75 41.3
Carub.0007s3262 Capsella rubella HOM05D001636 ORTHO05D011036 3.9e-07 58.5 53 56.6
BcaC02g12800 Brassica carinata HOM05D001636 ORTHO05D018456 5.1e-07 58.2 49 59.2
BNapus_Darmor_BZH_scaffold_188p00110 Brassica napus HOM05D001636 ORTHO05D018456 5.1e-07 58.2 49 59.2
BolSC55t61220H Brassica oleracea HOM05D001636 ORTHO05D011036 5.1e-07 58.2 49 59.2
BraA06t25930Z Brassica rapa HOM05D001636 ORTHO05D009134 5.1e-07 58.2 70 44.3
BraA09t39094Z Brassica rapa HOM05D001636 ORTHO05D027512 5.1e-07 58.2 58 51.7
Thhalv10017693m.g Eutrema salsugineum HOM05D001456 ORTHO05D011317 5.1e-07 58.2 50 52.0
AL5G21850 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 6.7e-07 57.8 52 53.8
BcaC02g12798 Brassica carinata HOM05D001636 ORTHO05D018456 6.7e-07 57.8 58 51.7
Carub.0005s2203 Capsella rubella HOM05D001636 ORTHO05D013186 6.7e-07 57.8 52 55.8
BcaC01g00882 Brassica carinata HOM05D001456 ORTHO05D011036 8.8e-07 57.4 52 48.1
C03p63560 Brassica napus HOM05D001636 ORTHO05D009134 8.8e-07 57.4 110 33.6
C03p85570 Brassica napus HOM05D001456 ORTHO05D002799 8.8e-07 57.4 52 48.1
BolC3t20845H Brassica oleracea HOM05D001456 ORTHO05D002799 8.8e-07 57.4 52 48.1
Thhalv10019735m.g Eutrema salsugineum HOM05D001456 ORTHO05D009134 8.8e-07 57.4 59 52.5
QL03p010255 Quercus lobata HOM05D001456 ORTHO05D002799 8.8e-07 57.4 77 41.6
QL03p010491 Quercus lobata HOM05D001456 ORTHO05D002799 8.8e-07 57.4 77 41.6
AL8G37840 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.1e-06 57.0 76 40.8
BcaNung04685 Brassica carinata HOM05D033825 ORTHO05D011036 1.1e-06 57.0 52 59.6
A03p61900 Brassica napus HOM05D002637 ORTHO05D015500 1.1e-06 57.0 148 27.7
A09p65440 Brassica napus HOM05D001636 ORTHO05D011036 1.1e-06 57.0 52 50.0
BraA09t41889Z Brassica rapa HOM05D001636 ORTHO05D011036 1.1e-06 57.0 52 50.0
CARHR172550 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.1e-06 57.0 76 39.5
BolSC55t61225H Brassica oleracea HOM05D001636 ORTHO05D018456 1.5e-06 56.6 49 57.1
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 2.0e-06 56.2 76 40.8
AT4G20480 Arabidopsis thaliana HOM05D001636 ORTHO05D018439 2.0e-06 56.2 53 52.8
BcaB03g11817 Brassica carinata HOM05D001456 ORTHO05D002799 2.0e-06 56.2 52 46.2
BcaC01g02793 Brassica carinata HOM05D001636 ORTHO05D009134 2.0e-06 56.2 70 41.4
BcaC01g02796 Brassica carinata HOM05D001636 ORTHO05D009134 2.0e-06 56.2 74 41.9
BcaC01g04096 Brassica carinata HOM05D001636 ORTHO05D009134 2.0e-06 56.2 51 51.0
BcaNung02002 Brassica carinata HOM05D001636 ORTHO05D009134 2.0e-06 56.2 51 51.0
A06p35510 Brassica napus HOM05D001636 ORTHO05D009134 2.0e-06 56.2 51 51.0
C01p32130 Brassica napus HOM05D011861 ORTHO05D023701 2.0e-06 56.2 42 61.9
C03p60330 Brassica napus HOM05D001636 ORTHO05D009134 2.0e-06 56.2 75 40.0
C07p43040 Brassica napus HOM05D001636 ORTHO05D009134 2.0e-06 56.2 51 51.0
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 2.0e-06 56.2 76 40.8
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 2.0e-06 56.2 76 40.8
BolC1t03141H Brassica oleracea HOM05D011861 ORTHO05D023701 2.0e-06 56.2 42 61.9
BolC3t16817H Brassica oleracea HOM05D001636 ORTHO05D009134 2.0e-06 56.2 51 51.0
BolC7t44832H Brassica oleracea HOM05D001636 ORTHO05D009134 2.0e-06 56.2 51 51.0
BraA06t26475Z Brassica rapa HOM05D001636 ORTHO05D009134 2.0e-06 56.2 51 51.0
CiPaw.08G083900 Carya illinoinensis HOM05D001456 ORTHO05D002799 2.0e-06 56.2 76 42.1
C06p31460 Brassica napus HOM05D001456 ORTHO05D011036 2.6e-06 55.8 52 59.6
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 2.6e-06 55.8 76 40.8
Cc01_g21840 Coffea canephora HOM05D001456 ORTHO05D002799 2.6e-06 55.8 76 39.5
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 2.6e-06 55.8 76 40.8
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 2.6e-06 55.8 76 40.8
Aa31LG11G2180 Aethionema arabicum HOM05D001456 ORTHO05D002799 3.3e-06 55.5 77 39.0
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 3.3e-06 55.5 76 40.8
C07p50280 Brassica napus HOM05D001636 ORTHO05D009134 3.3e-06 55.5 58 50.0
BolC2t11826H Brassica oleracea HOM05D001636 ORTHO05D009134 3.3e-06 55.5 81 39.5
CARHR172540 Cardamine hirsuta HOM05D001456 ORTHO05D002799 3.3e-06 55.5 76 40.8
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.3e-06 55.5 76 40.8
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 4.4e-06 55.1 76 39.5
AL1G11090 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 4.4e-06 55.1 52 55.8
CSS0023005 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 4.4e-06 55.1 76 39.5
Carub.0005s2893 Capsella rubella HOM05D001456 ORTHO05D002799 4.4e-06 55.1 76 40.8
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 4.4e-06 55.1 76 39.5
Zm00001eb328720 Zea mays HOM05D001456 ORTHO05D002799 4.4e-06 55.1 75 40.0
BcaC01g02551 Brassica carinata HOM05D001636 ORTHO05D009134 5.7e-06 54.7 70 42.9
BcaNung05633 Brassica carinata HOM05D001636 ORTHO05D009134 5.7e-06 54.7 72 41.7
A03p46830 Brassica napus HOM05D001456 ORTHO05D014991 5.7e-06 54.7 76 40.8
A08p16650 Brassica napus HOM05D001456 ORTHO05D002799 5.7e-06 54.7 52 46.2
C07p53540 Brassica napus HOM05D001636 ORTHO05D009134 5.7e-06 54.7 72 41.7
BolC7t45436H Brassica oleracea HOM05D001636 ORTHO05D009134 5.7e-06 54.7 72 41.7
BraA08t33630Z Brassica rapa HOM05D001456 ORTHO05D002799 5.7e-06 54.7 52 46.2
CiPaw.08G083800 Carya illinoinensis HOM05D001456 ORTHO05D002799 5.7e-06 54.7 76 40.8
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 5.7e-06 54.7 76 39.5
Sp2g24420 Schrenkiella parvula HOM05D001456 ORTHO05D002799 5.7e-06 54.7 76 39.5
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 7.4e-06 54.3 76 39.5
CARHR175440 Cardamine hirsuta HOM05D001636 ORTHO05D009134 7.4e-06 54.3 78 39.7
CARHR179320 Cardamine hirsuta HOM05D001456 ORTHO05D011036 7.4e-06 54.3 73 39.7
Sp5g22790 Schrenkiella parvula HOM05D001456 ORTHO05D002799 7.4e-06 54.3 72 44.4
Sc05g0000120 Simmondsia chinensis HOM05D001456 ORTHO05D002799 7.4e-06 54.3 76 36.8
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 7.4e-06 54.3 76 40.8
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 36.8
BcaB02g09846 Brassica carinata HOM05D001165 ORTHO05D001347 9.7e-06 53.9 56 44.6
BcaC02g06975 Brassica carinata HOM05D002637 ORTHO05D015500 9.7e-06 53.9 110 30.9
BcaNung03075 Brassica carinata HOM05D001636 ORTHO05D009134 9.7e-06 53.9 58 48.3
A02p41480 Brassica napus HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 9.7e-06 53.9 76 38.2
C01p02860 Brassica napus HOM05D002637 ORTHO05D016052 9.7e-06 53.9 73 39.7
C04p72790 Brassica napus HOM05D002637 ORTHO05D015500 9.7e-06 53.9 110 30.9
BolC4t28696H Brassica oleracea HOM05D002637 ORTHO05D015500 9.7e-06 53.9 110 30.9
BolC4t28760H Brassica oleracea HOM05D002637 ORTHO05D015500 9.7e-06 53.9 110 30.9
BolC5t32469H Brassica oleracea HOM05D001636 ORTHO05D009134 9.7e-06 53.9 57 47.4
BolC7t45437H Brassica oleracea HOM05D001636 ORTHO05D009134 9.7e-06 53.9 73 41.1
BolC7t45530H Brassica oleracea HOM05D001636 ORTHO05D009134 9.7e-06 53.9 58 48.3
BraA02t09089Z Brassica rapa HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
Thhalv10017826m.g Eutrema salsugineum HOM05D008913 ORTHO05D011317 9.7e-06 53.9 44 56.8
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
PSO210G6614 Papaver somniferum HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
PSO761G0515 Papaver somniferum HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
Prupe.3G003800 Prunus persica HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
RcHm_v2.0_Chr3g0486181 Rosa chinensis HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5
Hund11630 Selenicereus undatus HOM05D001456 ORTHO05D002799 9.7e-06 53.9 76 39.5


User provided reference genes

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