Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 3.2e-152 542.0 329 100.0
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 1.2e-151 540.0 329 99.7
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 5.6e-144 514.6 346 90.2
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.8e-86 323.6 344 60.2
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 1.1e-83 314.3 349 62.5
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 3.2e-83 312.8 315 69.2
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 9.0e-78 294.7 336 63.4
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 3.6e-74 282.7 352 60.5
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 6.7e-73 278.5 330 60.9
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 2.5e-72 276.6 355 60.0
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 5.7e-72 275.4 356 59.0
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 5.7e-72 275.4 356 59.0
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 5.7e-72 275.4 356 59.0
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 2.1e-66 256.9 357 54.9
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 1.1e-56 224.6 313 56.9
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 4.4e-56 222.6 306 58.5
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 2.4e-54 216.9 400 44.2
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.7e-52 210.7 397 44.3
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 6.5e-44 182.2 307 54.1
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 3.7e-39 166.4 414 37.0
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 3.1e-38 163.3 126 67.5
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 1.2e-37 161.4 125 68.0
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 4.5e-37 159.5 407 36.9
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.3e-36 157.9 287 42.2
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 2.3e-36 157.1 349 35.5
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 2.9e-36 156.8 406 42.6
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 5.0e-36 156.0 356 35.4
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.5e-35 154.5 350 34.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 1.5e-35 154.5 359 37.6
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.9e-35 154.1 114 67.5
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 3.3e-35 153.3 111 71.2
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.3e-35 153.3 343 34.4
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 7.2e-35 152.1 335 40.0
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 9.5e-35 151.8 339 35.4
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 2.1e-34 150.6 357 35.3
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.8e-34 150.2 114 68.4
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 4.7e-34 149.4 346 38.7
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.8e-33 147.5 137 59.9
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.3e-33 147.1 120 66.7
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 5.2e-33 146.0 321 40.8
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 6.8e-33 145.6 352 36.4
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 1.2e-32 144.8 116 69.8
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 2.0e-32 144.1 316 40.8
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 2.0e-32 144.1 130 60.8
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 2.6e-32 143.7 112 67.9
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 3.4e-32 143.3 111 68.5
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 4.4e-32 142.9 120 63.3
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 4.4e-32 142.9 404 32.7
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 4.4e-32 142.9 389 31.9
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 7.5e-32 142.1 108 69.4
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 1.3e-31 141.4 114 64.9
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 1.3e-31 141.4 137 57.7
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 2.2e-31 140.6 115 64.3
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 2.2e-31 140.6 139 60.4
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 2.2e-31 140.6 393 33.8
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 2.8e-31 140.2 126 58.7
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 3.7e-31 139.8 132 58.3
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 4.9e-31 139.4 117 65.0
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 6.3e-31 139.0 100 69.0
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 1.1e-30 138.3 119 61.3
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 1.1e-30 138.3 80 81.2
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.8e-30 137.5 119 57.1
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.8e-30 137.5 121 60.3
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 1.8e-30 137.5 333 38.7
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 1.8e-30 137.5 104 68.3
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 1.8e-30 137.5 104 68.3
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 1.8e-30 137.5 108 66.7
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 1.8e-30 137.5 91 71.4
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 2.4e-30 137.1 126 61.1
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 2.4e-30 137.1 119 61.3
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 2.4e-30 137.1 112 64.3
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 3.1e-30 136.7 106 65.1
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 3.1e-30 136.7 111 66.7
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 4.1e-30 136.3 357 32.8
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 5.4e-30 136.0 119 58.0
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 7.0e-30 135.6 109 66.1
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 1.6e-29 134.4 384 31.2
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.6e-29 134.4 116 60.3
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 2.0e-29 134.0 123 58.5
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 5.9e-29 132.5 114 64.9
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 5.9e-29 132.5 403 33.7
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 7.8e-29 132.1 374 36.1
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 7.8e-29 132.1 80 76.2
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.3e-28 131.3 364 36.0
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.7e-28 131.0 123 55.3
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 1.7e-28 131.0 337 39.2
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 1.7e-28 131.0 80 76.2
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 2.3e-28 130.6 387 31.0
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 2.3e-28 130.6 252 37.7
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 2.3e-28 130.6 307 35.5
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.9e-28 130.2 111 63.1
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 2.9e-28 130.2 76 80.3
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 2.9e-28 130.2 114 63.2
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 3.8e-28 129.8 409 31.1
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 3.8e-28 129.8 130 53.1
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 5.0e-28 129.4 108 61.1
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 8.6e-28 128.6 224 47.8
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 8.6e-28 128.6 96 67.7
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.1e-27 128.3 100 67.0
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 1.1e-27 128.3 126 57.9
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 1.5e-27 127.9 216 40.3
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 1.9e-27 127.5 410 30.7
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 3.3e-27 126.7 432 30.6
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 3.3e-27 126.7 100 66.0
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 5.6e-27 125.9 263 39.2
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 7.3e-27 125.6 395 32.7
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 6.1e-26 122.5 139 51.1
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 6.1e-26 122.5 139 51.1
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 1.8e-25 120.9 127 52.8
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 2.3e-25 120.6 407 33.9
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 4.0e-25 119.8 290 36.2
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 5.2e-25 119.4 396 30.3
BcaC06g35794 Brassica carinata HOM05D018474 ORTHO05D027757 1.2e-24 118.2 263 42.2
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 2.6e-24 117.1 100 59.0
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 4.4e-24 116.3 119 51.3
C07p10770 Brassica napus HOM05D018474 ORTHO05D027757 2.9e-23 113.6 297 40.4
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.9e-22 110.9 168 41.1
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-21 108.2 103 58.3
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.5e-21 106.7 114 55.3
BolC7t41545H Brassica oleracea HOM05D018474 ORTHO05D027757 3.9e-20 103.2 309 44.3
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 8.6e-20 102.1 60 78.3
BolC7t41550H Brassica oleracea HOM05D018474 ORTHO05D027757 6.2e-18 95.9 314 42.4
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 6.2e-18 95.9 233 42.5
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 1.9e-14 84.3 81 55.6
BcaC06g35790 Brassica carinata HOM05D018474 ORTHO05D006717 2.1e-13 80.9 202 45.0
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 1.7e-12 77.8 55 67.3
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 3.9e-12 76.6 45 73.3
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 5.1e-12 76.3 83 60.2
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 2.5e-11 73.9 89 52.8
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 5.6e-11 72.8 35 100.0
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 5.6e-11 72.8 35 100.0
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.1e-09 68.6 330 37.6
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.5e-08 64.7 300 27.0
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 9.9e-08 62.0 84 42.9
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 4.9e-07 59.7 70 55.7
BcaC06g35789 Brassica carinata HOM05D018474 ORTHO05D006717 5.4e-06 56.2 57 61.4


User provided reference genes

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