Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t57700H Brassica oleracea HOM05D003175 ORTHO05D003591 1.6e-25 118.6 58 100.0
BcaB08g36038 Brassica carinata HOM05D003175 ORTHO05D003591 1.9e-23 111.7 55 96.4
A10p14260 Brassica napus HOM05D003175 ORTHO05D003591 2.5e-23 111.3 54 98.1
BraA10t43517Z Brassica rapa HOM05D003175 ORTHO05D003591 2.5e-23 111.3 54 98.1
Sp6g18640 Schrenkiella parvula HOM05D003175 ORTHO05D003591 1.2e-20 102.4 53 90.6
BcaC03g14195 Brassica carinata HOM05D003175 ORTHO05D003591 2.6e-20 101.3 55 90.9
A02p08860 Brassica napus HOM05D003175 ORTHO05D003591 2.6e-20 101.3 55 90.9
C02p14770 Brassica napus HOM05D003175 ORTHO05D003591 2.6e-20 101.3 55 90.9
BolC2t07606H Brassica oleracea HOM05D003175 ORTHO05D003591 2.6e-20 101.3 55 90.9
BraA02t05955Z Brassica rapa HOM05D003175 ORTHO05D003591 2.6e-20 101.3 55 90.9
Thhalv10014987m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 5.8e-20 100.1 53 88.7
CARHR270680 Cardamine hirsuta HOM05D003175 ORTHO05D003591 6.4e-19 96.7 53 86.8
AL52U10030 Arabidopsis lyrata HOM05D001215 ORTHO05D003591 2.4e-18 94.7 54 88.9
AL8G32800 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 2.4e-18 94.7 54 88.9
Carub.0008s1742 Capsella rubella HOM05D003175 ORTHO05D003591 4.1e-18 94.0 53 84.9
Aa31LG1G18310 Aethionema arabicum HOM05D003175 ORTHO05D003591 5.4e-18 93.6 52 86.5
AT5G56940 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 5.4e-18 93.6 54 87.0
BcaC01g06456 Brassica carinata HOM05D003175 ORTHO05D003591 1.7e-16 88.6 54 77.8
BcaNung05244 Brassica carinata HOM05D003175 ORTHO05D003591 1.7e-16 88.6 54 77.8
C03p15250 Brassica napus HOM05D003175 ORTHO05D003591 1.7e-16 88.6 54 77.8
MELO3C015489.2 Cucumis melo HOM05D003175 ORTHO05D003591 8.6e-16 86.3 53 73.6
CsaV3_1G040590 Cucumis sativus L. HOM05D003175 ORTHO05D003591 8.6e-16 86.3 56 71.4
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 1.1e-15 85.9 52 76.9
MD15G1209200 Malus domestica HOM05D003175 ORTHO05D003591 1.1e-15 85.9 52 76.9
Sabra04G0148100 Salix brachista HOM05D003175 ORTHO05D003591 1.1e-15 85.9 56 67.9
Dinv42332 Davidia involucrata HOM05D003175 ORTHO05D003591 1.9e-15 85.1 52 76.9
THA.LOC104813493 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 1.9e-15 85.1 46 80.4
DCAR_003521 Daucus carota HOM05D003175 ORTHO05D003591 3.3e-15 84.3 52 76.9
CSS0001019 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 4.3e-15 84.0 46 80.4
CSS0022912 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 4.3e-15 84.0 46 80.4
CSS0031089 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 4.3e-15 84.0 46 80.4
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 5.6e-15 83.6 53 67.9
Hma1.2p1_1838F.1_g304840 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 7.3e-15 83.2 52 75.0
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 7.3e-15 83.2 55 72.7
Hma1.2p1_1453F.1_g284310 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 9.5e-15 82.8 46 80.4
Rhsim03G0087900 Rhododendron simsii HOM05D003175 ORTHO05D003591 9.5e-15 82.8 52 75.0
DCAR_031336 Daucus carota HOM05D003175 ORTHO05D003591 1.2e-14 82.4 47 76.6
Eucgr.C03471 Eucalyptus grandis HOM05D003175 ORTHO05D003591 1.2e-14 82.4 46 80.4
Eucgr.C03473 Eucalyptus grandis HOM05D003175 ORTHO05D003591 1.2e-14 82.4 46 80.4
THA.LOC104811748 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 1.2e-14 82.4 46 78.3
TWI73G0679 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 1.6e-14 82.0 50 74.0
Dinv36778 Davidia involucrata HOM05D003175 ORTHO05D003591 2.1e-14 81.6 47 78.7
Haze_04011 Corylus avellana HOM05D003175 ORTHO05D003591 2.8e-14 81.3 47 78.7
Haze_21391 Corylus avellana HOM05D003175 ORTHO05D003591 2.8e-14 81.3 47 78.7
ECA234G4558 Erigeron canadensis HOM05D003175 ORTHO05D003591 2.8e-14 81.3 55 72.7
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 2.8e-14 81.3 46 80.4
Actinidia38453 Actinidia chinensis HOM05D003175 ORTHO05D003591 3.6e-14 80.9 52 73.1
CSS0031311 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 3.6e-14 80.9 46 78.3
CSS0037416 Camellia sinensis var. sinensis HOM05D003175 ORTHO05D003591 4.7e-14 80.5 46 78.3
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 4.7e-14 80.5 46 78.3
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 4.7e-14 80.5 46 78.3
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 4.7e-14 80.5 46 78.3
Oeu011490.1 Olea europaea HOM05D003175 ORTHO05D003591 4.7e-14 80.5 47 78.7
Hund04301 Selenicereus undatus HOM05D003175 ORTHO05D003591 4.7e-14 80.5 53 71.7
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 4.7e-14 80.5 47 76.6
vmacro23436 Vaccinium macrocarpon HOM05D003175 ORTHO05D003591 4.7e-14 80.5 52 73.1
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 6.2e-14 80.1 43 83.7
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 6.2e-14 80.1 49 77.6
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 6.2e-14 80.1 52 73.1
CANSAT11G2123 Cannabis sativa HOM05D003175 ORTHO05D003591 8.1e-14 79.7 52 71.2
Duzib168G1627 Durio zibethinus HOM05D003175 ORTHO05D003591 8.1e-14 79.7 46 78.3
Duzib150G0820 Durio zibethinus HOM05D003175 ORTHO05D003591 1.1e-13 79.3 46 76.1
Glyma.15G170800 Glycine max HOM05D003175 ORTHO05D003591 1.1e-13 79.3 55 65.5
HanXRQChr10g0319441 Helianthus annuus HOM05D003175 ORTHO05D003591 1.1e-13 79.3 52 71.2
PGR102G2971 Punica granatum HOM05D003175 ORTHO05D003591 1.1e-13 79.3 46 76.1
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 1.4e-13 79.0 45 75.6
EL10Ac6g15408 Beta vulgaris HOM05D003175 ORTHO05D003591 1.4e-13 79.0 53 71.7
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 1.4e-13 79.0 55 70.9
Thecc.09G086900 Theobroma cacao HOM05D003175 ORTHO05D003591 1.4e-13 79.0 51 72.5
CiPaw.08G005200 Carya illinoinensis HOM05D003175 ORTHO05D003591 1.8e-13 78.6 52 75.0
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 1.8e-13 78.6 49 73.5
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 1.8e-13 78.6 52 71.2
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 1.8e-13 78.6 55 67.3
Actinidia29908 Actinidia chinensis HOM05D003175 ORTHO05D003591 2.3e-13 78.2 52 71.2
Glyma.09G064500 Glycine max HOM05D003175 ORTHO05D003591 2.3e-13 78.2 55 67.3
Gohir.A05G030500 Gossypium hirsutum HOM05D003175 ORTHO05D003591 2.3e-13 78.2 46 76.1
HanXRQChr12g0354621 Helianthus annuus HOM05D003175 ORTHO05D003591 2.3e-13 78.2 46 78.3
Lsat_1_v5_gn_5_142921 Lactuca sativa HOM05D003175 ORTHO05D003591 2.3e-13 78.2 57 66.7
TAR629G2636 Trochodendron aralioides HOM05D003175 ORTHO05D003591 2.3e-13 78.2 52 67.3
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 2.3e-13 78.2 46 76.1
Lj6g0021196 Lotus japonicus HOM05D003175 ORTHO05D003591 3.1e-13 77.8 53 67.9
SGA_v2.0_scaffold337G49169 Striga asiatica HOM05D003175 ORTHO05D003591 3.1e-13 77.8 46 78.3
SGA_v2.0_scaffold40G15473 Striga asiatica HOM05D003175 ORTHO05D003591 3.1e-13 77.8 46 78.3
Cfa006747 Carpinus fangiana HOM05D003175 ORTHO05D003591 4.0e-13 77.4 47 76.6
Ah.14g083830 Amaranthus hybridus HOM05D003175 ORTHO05D003591 5.2e-13 77.0 40 85.0
Psat1g140000 Pisum sativum HOM05D003175 ORTHO05D003591 5.2e-13 77.0 53 66.0
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 5.2e-13 77.0 42 81.0
Sc18g0002200 Simmondsia chinensis HOM05D003175 ORTHO05D003591 5.2e-13 77.0 52 67.3
FAN26G2348 Fragaria x ananassa HOM05D003175 ORTHO05D003591 6.8e-13 76.6 49 71.4
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 6.8e-13 76.6 55 65.5
Ah.03g147100 Amaranthus hybridus HOM05D003175 ORTHO05D003591 8.9e-13 76.3 39 87.2
MSTRG.5776 Avicennia marina HOM05D003175 ORTHO05D003591 8.9e-13 76.3 46 76.1
Cpa.g.sc128.7 Carica papaya HOM05D003175 ORTHO05D003591 8.9e-13 76.3 43 83.7
Lalb_Chr08g0232311 Lupinus albus HOM05D003175 ORTHO05D003591 8.9e-13 76.3 51 70.6
Os09g0498100 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 8.9e-13 76.3 53 64.2
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 8.9e-13 76.3 54 66.7
TAR371G0179 Trochodendron aralioides HOM05D003175 ORTHO05D003591 8.9e-13 76.3 46 69.6
FAN23G2612 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.2e-12 75.9 55 67.3
FAN26G0002 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.2e-12 75.9 55 67.3
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 1.2e-12 75.9 49 71.4
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 1.2e-12 75.9 49 71.4
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 1.5e-12 75.5 55 65.5
FAN28G0810 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.5e-12 75.5 52 71.2
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 1.5e-12 75.5 56 60.7
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 1.5e-12 75.5 46 73.9
VMungo0251G0584 Vigna mungo HOM05D003175 ORTHO05D003591 1.5e-12 75.5 53 69.8
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 2.0e-12 75.1 55 65.5
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 2.0e-12 75.1 56 62.5
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 2.0e-12 75.1 47 74.5
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 3.4e-12 74.3 42 73.8
Os08g0517900 Oryza sativa ssp. japonica HOM05D003175 ORTHO05D003591 4.4e-12 73.9 53 58.5
SEGI_17182 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 4.4e-12 73.9 53 69.8
AUR62017777 Chenopodium quinoa HOM05D003175 ORTHO05D003591 5.8e-12 73.6 53 66.0
Nn8g40845 Nelumbo nucifera HOM05D003175 ORTHO05D003591 5.8e-12 73.6 47 68.1
VMungo0251G0230 Vigna mungo HOM05D003175 ORTHO05D003591 5.8e-12 73.6 53 64.2
AUR62003470 Chenopodium quinoa HOM05D003175 ORTHO05D003591 7.5e-12 73.2 53 66.0
PGSC0003DMG400022985 Solanum tuberosum HOM05D003175 ORTHO05D003591 7.5e-12 73.2 54 63.0
TPR.G10463 Trifolium pratense HOM05D003175 ORTHO05D003591 7.5e-12 73.2 53 67.9
vmacro06300 Vaccinium macrocarpon HOM05D003175 ORTHO05D003591 7.5e-12 73.2 46 71.7
Cc06_g11550 Coffea canephora HOM05D003175 ORTHO05D003591 9.8e-12 72.8 45 75.6
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 9.8e-12 72.8 58 60.3
Zm00001eb317180 Zea mays HOM05D003175 ORTHO05D003591 9.8e-12 72.8 56 64.3
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 1.3e-11 72.4 45 71.1
Medtr2g039750 Medicago truncatula HOM05D003175 ORTHO05D003591 2.2e-11 71.6 53 60.4
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.2e-11 71.6 45 71.1
Peaxi162Scf01425g00001 Petunia axillaris HOM05D003175 ORTHO05D003591 2.2e-11 71.6 39 79.5
Migut.J00455 Erythranthe guttata HOM05D003175 ORTHO05D003591 3.7e-11 70.9 40 80.0
Hma1.2p1_3088F.1_g332510 Hydrangea macrophylla HOM05D003175 ORTHO05D003591 3.7e-11 70.9 46 71.7
PSO017G4091 Papaver somniferum HOM05D003175 ORTHO05D003591 3.7e-11 70.9 42 73.8
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 3.7e-11 70.9 42 69.0
TPR.G13431 Trifolium pratense HOM05D003175 ORTHO05D003591 3.7e-11 70.9 46 69.6
arahy.Tifrunner.gnm1.ann1.24WPAI Arachis hypogaea HOM05D003175 ORTHO05D003591 6.4e-11 70.1 47 68.1
arahy.Tifrunner.gnm1.ann1.TVN50Z Arachis hypogaea HOM05D003175 ORTHO05D003591 6.4e-11 70.1 47 68.1
SGA_v2.0_scaffold49G18150 Striga asiatica HOM05D003175 ORTHO05D003591 6.4e-11 70.1 46 71.7
Aqoxy7G02783 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 8.3e-11 69.7 56 60.7
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 1.4e-10 68.9 42 71.4
Medtr5g014070 Medicago truncatula HOM05D003175 ORTHO05D003591 1.9e-10 68.6 48 64.6
CDE06G2360 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 2.4e-10 68.2 46 65.2
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 2.4e-10 68.2 39 74.4
PSO384G0269 Papaver somniferum HOM05D003175 ORTHO05D003591 2.4e-10 68.2 39 74.4
CDE02G0210 Ceratophyllum demersum HOM05D003175 ORTHO05D003591 3.2e-10 67.8 45 66.7
Duzib187G0793 Durio zibethinus HOM05D003175 ORTHO05D003591 5.4e-10 67.0 46 67.4
ATR0626G012 Amborella trichopoda HOM05D003175 ORTHO05D003591 1.2e-09 65.9 40 72.5
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 1.2e-09 65.9 58 56.9
PSO384G5082 Papaver somniferum HOM05D003175 ORTHO05D003591 1.2e-09 65.9 39 71.8
ATR0724G037 Amborella trichopoda HOM05D003175 ORTHO05D003591 2.7e-09 64.7 56 57.1
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 1.0e-08 62.8 39 69.2
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 1.0e-08 62.8 42 66.7
BcaB01g04434 Brassica carinata HOM05D003175 ORTHO05D003591 1.3e-08 62.4 54 63.0
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 1.6e-06 55.5 52 53.8
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 4.7e-06 53.9 38 65.8


User provided reference genes

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