Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t56988H Brassica oleracea HOM05D006291 ORTHO05D007669 1.9e-44 182.2 95 100.0
C09p41100 Brassica napus HOM05D006291 ORTHO05D007669 3.9e-42 174.5 101 93.1
BcaC04g20645 Brassica carinata HOM05D006291 ORTHO05D007669 1.2e-38 162.9 92 94.6
BcaC01g06135 Brassica carinata HOM05D006291 ORTHO05D007669 6.5e-37 157.1 87 94.3
C03p18890 Brassica napus HOM05D006291 ORTHO05D007669 6.5e-37 157.1 87 94.3
BraA03t10896Z Brassica rapa HOM05D006291 ORTHO05D007669 1.1e-36 156.4 88 93.2
A03p16050 Brassica napus HOM05D006291 ORTHO05D007669 3.2e-36 154.8 87 93.1
Sp6g13890 Schrenkiella parvula HOM05D006291 ORTHO05D007669 7.9e-35 150.2 87 89.7
Thhalv10015026m.g Eutrema salsugineum HOM05D006291 ORTHO05D007669 6.7e-34 147.1 87 87.4
AT2G07340 Arabidopsis thaliana HOM05D006291 ORTHO05D007669 2.0e-33 145.6 92 83.7
BcaB01g04158 Brassica carinata HOM05D006291 ORTHO05D007669 2.2e-32 142.1 100 79.0
Carub.0013s0004 Capsella rubella HOM05D006291 ORTHO05D007669 4.1e-31 137.9 92 79.3
THA.LOC104826574 Tarenaya hassleriana HOM05D006291 ORTHO05D007669 2.9e-29 131.7 92 76.1
MD16G1236600 Malus domestica HOM05D006291 ORTHO05D007669 2.1e-27 125.6 92 75.0
Aa31LG8G11030 Aethionema arabicum HOM05D006291 ORTHO05D007669 2.7e-27 125.2 136 56.6
Migut.L01922 Erythranthe guttata HOM05D006291 ORTHO05D007669 2.7e-27 125.2 92 73.9
MD13G1231800 Malus domestica HOM05D006291 ORTHO05D007669 3.6e-27 124.8 92 72.8
Prupe.1G063000 Prunus persica HOM05D006291 ORTHO05D007669 3.6e-27 124.8 93 72.0
RcHm_v2.0_Chr4g0397141 Rosa chinensis HOM05D006291 ORTHO05D007669 3.6e-27 124.8 92 71.7
Aqoxy7G02914 Aquilegia oxysepala HOM05D006291 ORTHO05D007669 6.1e-27 124.0 92 71.7
SGA_v2.0_scaffold21G09601 Striga asiatica HOM05D006291 ORTHO05D007669 6.1e-27 124.0 92 72.8
Manes.02G198400 Manihot esculenta HOM05D006291 ORTHO05D007669 1.0e-26 123.2 92 71.7
Actinidia38532 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.4e-26 122.9 92 73.9
Nn8g40626 Nelumbo nucifera HOM05D006291 ORTHO05D007669 1.4e-26 122.9 92 72.8
Rhsim01G0107900 Rhododendron simsii HOM05D006291 ORTHO05D007669 1.4e-26 122.9 92 73.9
FAN07G2657 Fragaria x ananassa HOM05D006291 ORTHO05D007669 1.8e-26 122.5 92 70.7
FAN22G0966 Fragaria x ananassa HOM05D006291 ORTHO05D007669 1.8e-26 122.5 92 70.7
CSS0029803 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 3.0e-26 121.7 96 69.8
PGR044G0028 Punica granatum HOM05D006291 ORTHO05D007669 3.0e-26 121.7 92 70.7
GSVIVG01032270001 Vitis vinifera HOM05D006291 ORTHO05D007669 3.0e-26 121.7 92 71.7
Thecc.10G119800 Theobroma cacao HOM05D006291 ORTHO05D007669 4.0e-26 121.3 87 75.9
Duzib128G2031 Durio zibethinus HOM05D006291 ORTHO05D007669 5.2e-26 120.9 92 71.7
FvH4_4g05950 Fragaria vesca HOM05D006291 ORTHO05D007669 5.2e-26 120.9 92 69.6
Gohir.A05G286200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 5.2e-26 120.9 92 70.7
Nitab4.5_0000170g0080 Nicotiana tabacum HOM05D006291 ORTHO05D007669 6.7e-26 120.6 97 68.0
Actinidia02472 Actinidia chinensis HOM05D006291 ORTHO05D007669 8.8e-26 120.2 92 71.7
CSS0003994 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 8.8e-26 120.2 92 71.7
CSS0013846 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 8.8e-26 120.2 92 71.7
COL.COLO4_05650 Corchorus olitorius HOM05D006291 ORTHO05D007669 8.8e-26 120.2 92 70.7
FAN12G2114 Fragaria x ananassa HOM05D006291 ORTHO05D007669 8.8e-26 120.2 94 68.1
Gorai.009G302200 Gossypium raimondii HOM05D006291 ORTHO05D007669 8.8e-26 120.2 94 69.1
TAR362G0416 Trochodendron aralioides HOM05D006291 ORTHO05D007669 8.8e-26 120.2 92 70.7
Duzib128G1629 Durio zibethinus HOM05D006291 ORTHO05D007669 1.5e-25 119.4 92 70.7
Zm00001eb240760 Zea mays HOM05D006291 ORTHO05D007669 1.5e-25 119.4 92 67.4
Ciclev10009894m.g Citrus clementina HOM05D006291 ORTHO05D007669 2.0e-25 119.0 92 68.5
Solyc07g042620.4 Solanum lycopersicum HOM05D006291 ORTHO05D007669 2.0e-25 119.0 92 70.7
Sopen07g022310 Solanum pennellii HOM05D006291 ORTHO05D007669 2.0e-25 119.0 92 70.7
PGSC0003DMG400013569 Solanum tuberosum HOM05D006291 ORTHO05D007669 2.0e-25 119.0 92 70.7
Actinidia02463 Actinidia chinensis HOM05D006291 ORTHO05D007669 2.6e-25 118.6 92 70.7
Gohir.D05G287200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 2.6e-25 118.6 92 69.6
Nitab4.5_0003139g0110 Nicotiana tabacum HOM05D006291 ORTHO05D007669 3.3e-25 118.2 92 70.7
TWI63G0490 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 3.3e-25 118.2 92 69.6
EL10Ac2g03616 Beta vulgaris HOM05D006291 ORTHO05D007669 5.7e-25 117.5 92 68.5
PSO063G7114 Papaver somniferum HOM05D006291 ORTHO05D007669 5.7e-25 117.5 92 68.5
PSO170G1648 Papaver somniferum HOM05D006291 ORTHO05D007669 5.7e-25 117.5 92 68.5
CiPaw.16G104700 Carya illinoinensis HOM05D006291 ORTHO05D007669 7.5e-25 117.1 92 68.5
CAN.G54.10 Capsicum annuum HOM05D006291 ORTHO05D007669 1.3e-24 116.3 92 68.5
Potri.006G079700 Populus trichocarpa HOM05D006291 ORTHO05D007669 1.3e-24 116.3 92 67.4
TWI32G0019 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 1.3e-24 116.3 93 68.8
MSTRG.10473 Avicennia marina HOM05D006291 ORTHO05D007669 1.7e-24 115.9 91 69.2
AUR62020734 Chenopodium quinoa HOM05D006291 ORTHO05D007669 1.7e-24 115.9 92 68.5
AUR62027977 Chenopodium quinoa HOM05D006291 ORTHO05D007669 1.7e-24 115.9 92 68.5
Dinv12620 Davidia involucrata HOM05D006291 ORTHO05D007669 1.7e-24 115.9 94 68.1
Peaxi162Scf00474g00519 Petunia axillaris HOM05D006291 ORTHO05D007669 1.7e-24 115.9 92 68.5
Sed0008839 Sechium edule HOM05D006291 ORTHO05D007669 1.7e-24 115.9 92 68.5
Eucgr.G00957 Eucalyptus grandis HOM05D006291 ORTHO05D007669 3.7e-24 114.8 92 67.4
HanXRQChr10g0309491 Helianthus annuus HOM05D006291 ORTHO05D007669 3.7e-24 114.8 92 68.5
CsaV3_2G009230 Cucumis sativus L. HOM05D006291 ORTHO05D007669 8.2e-24 113.6 92 66.3
Sabra06G0060300 Salix brachista HOM05D006291 ORTHO05D007669 8.2e-24 113.6 92 66.3
HanXRQChr12g0358571 Helianthus annuus HOM05D006291 ORTHO05D007669 1.4e-23 112.8 92 67.4
Cc06_g23850 Coffea canephora HOM05D006291 ORTHO05D007669 1.8e-23 112.5 92 67.4
unitig_8.g3543 Utricularia gibba HOM05D006291 ORTHO05D007669 1.8e-23 112.5 92 65.2
arahy.Tifrunner.gnm1.ann1.SCY2K5 Arachis hypogaea HOM05D006291 ORTHO05D007669 2.4e-23 112.1 91 67.0
HPP92_021942 Vanilla planifolia HOM05D006291 ORTHO05D007669 2.4e-23 112.1 92 64.1
HPP92_021968 Vanilla planifolia HOM05D006291 ORTHO05D007669 2.4e-23 112.1 92 64.1
arahy.Tifrunner.gnm1.ann1.8H1PJC Arachis hypogaea HOM05D006291 ORTHO05D007669 3.1e-23 111.7 92 66.3
CDE02G3570 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 3.1e-23 111.7 92 65.2
BolC3t14280H Brassica oleracea HOM05D006291 ORTHO05D007669 4.1e-23 111.3 59 96.6
ECA234G1508 Erigeron canadensis HOM05D006291 ORTHO05D007669 4.1e-23 111.3 92 65.2
Dinv26485 Davidia involucrata HOM05D006291 ORTHO05D007669 5.3e-23 110.9 99 63.6
Hund19355 Selenicereus undatus HOM05D006291 ORTHO05D007669 5.3e-23 110.9 79 73.4
Ah.10g032820 Amaranthus hybridus HOM05D006291 ORTHO05D007669 7.0e-23 110.5 92 65.2
MELO3C003910.2 Cucumis melo HOM05D006291 ORTHO05D007669 7.0e-23 110.5 92 65.2
Sc23g0004310 Simmondsia chinensis HOM05D006291 ORTHO05D007669 7.0e-23 110.5 92 66.3
Glyma.15G235500 Glycine max HOM05D006291 ORTHO05D007669 9.1e-23 110.2 92 63.0
Glyma.13G197100 Glycine max HOM05D006291 ORTHO05D007669 1.2e-22 109.8 92 63.0
Phvul.011G206700 Phaseolus vulgaris HOM05D006291 ORTHO05D007669 2.0e-22 109.0 92 63.0
CDE06G0918 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 2.7e-22 108.6 92 62.0
Lj3g0009914 Lotus japonicus HOM05D006291 ORTHO05D007669 2.7e-22 108.6 92 63.0
ATR0580G035 Amborella trichopoda HOM05D006291 ORTHO05D007669 3.5e-22 108.2 92 63.0
Potri.018G149200 Populus trichocarpa HOM05D006291 ORTHO05D007669 3.5e-22 108.2 92 64.1
VMungo1127G1563 Vigna mungo HOM05D006291 ORTHO05D007669 1.3e-21 106.3 92 62.0
Lsat_1_v5_gn_5_80980 Lactuca sativa HOM05D006291 ORTHO05D007669 1.7e-21 105.9 89 67.4
CANSAT56G1353 Cannabis sativa HOM05D006291 ORTHO05D007669 5.0e-21 104.4 91 61.5
CANSAT56G3141 Cannabis sativa HOM05D006291 ORTHO05D007669 5.0e-21 104.4 91 61.5
Lalb_Chr01g0007741 Lupinus albus HOM05D006291 ORTHO05D007669 5.0e-21 104.4 92 60.9
Oeu028819.1 Olea europaea HOM05D006291 ORTHO05D007669 5.0e-21 104.4 76 73.7
CARHR104040 Cardamine hirsuta HOM05D006291 ORTHO05D007669 3.2e-20 101.7 59 86.4
CDE06G1428 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 5.5e-20 100.9 92 60.9
Ca_23954_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 7.2e-20 100.5 92 58.7
TPR.G27823 Trifolium pratense HOM05D006291 ORTHO05D007669 7.2e-20 100.5 92 58.7
AL3G44130 Arabidopsis lyrata HOM05D006291 ORTHO05D007669 6.1e-19 97.4 62 82.3
Psat0s418g0040 Pisum sativum HOM05D006291 ORTHO05D007669 5.2e-18 94.4 91 54.9
Os02g0462900 Oryza sativa ssp. japonica HOM05D006291 ORTHO05D007669 4.4e-17 91.3 59 74.6
Ca_23960_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 9.8e-17 90.1 84 58.3
Nitab4.5_0002603g0030 Nicotiana tabacum HOM05D006291 ORTHO05D007669 3.7e-16 88.2 72 66.7
DCAR_020455 Daucus carota HOM05D006291 ORTHO05D007669 8.3e-16 87.0 67 71.6
Pp3c19_4350 Physcomitrium patens HOM05D006291 ORTHO05D007669 5.4e-15 84.3 91 49.5
ClCG11G011210 Citrullus lanatus HOM05D006291 ORTHO05D007669 9.1e-15 83.6 59 69.5
Mapoly0027s0144 Marchantia polymorpha HOM05D006291 ORTHO05D007669 9.1e-15 83.6 92 48.9
Atru.BG.15.p Acer truncatum HOM05D006291 ORTHO05D007669 1.6e-14 82.8 62 69.4
Actinidia07563 Actinidia chinensis HOM05D006291 ORTHO05D007669 2.7e-14 82.0 66 69.7
MBI16_g09344_MAGBIO Magnolia biondii HOM05D006291 ORTHO05D007669 5.9e-14 80.9 148 40.5
Medtr8g039140 Medicago truncatula HOM05D006291 ORTHO05D007669 2.8e-11 72.0 67 56.7
SEGI_05817 Sequoiadendron giganteum HOM05D006291 ORTHO05D007669 1.4e-10 69.7 64 54.7
SMO200G0161 Selaginella moellendorffii HOM05D006291 ORTHO05D007669 2.3e-10 68.9 82 46.3


User provided reference genes

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