Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 5.6e-265 917.1 498 100.0
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 3.9e-242 841.3 487 96.1
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 8.5e-237 823.5 454 99.3
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 1.1e-233 813.1 482 94.6
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 6.3e-232 807.4 487 92.2
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 2.7e-227 792.0 487 91.2
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 1.0e-226 790.0 487 89.5
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 1.0e-226 790.0 487 89.5
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 4.4e-225 784.6 487 89.3
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 4.8e-224 781.2 487 89.7
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 8.2e-224 780.4 490 89.0
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 8.2e-224 780.4 487 90.3
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 1.8e-223 779.2 490 88.2
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 1.8e-223 779.2 490 89.0
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 2.4e-223 778.9 490 89.2
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 1.2e-222 776.5 487 84.8
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 2.6e-222 775.4 507 86.6
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 9.4e-220 766.9 439 97.5
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 3.6e-211 738.4 495 85.1
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 1.1e-207 726.9 536 79.1
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 7.0e-199 697.6 492 77.4
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 3.5e-198 695.3 492 76.6
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 3.8e-197 691.8 495 74.3
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 2.1e-195 686.0 492 77.2
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 4.7e-195 684.9 492 77.0
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 1.4e-194 683.3 492 76.8
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 7.5e-193 677.6 515 73.4
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 2.9e-192 675.6 499 73.1
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 3.7e-192 675.2 510 71.6
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 8.3e-192 674.1 494 77.3
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 4.6e-190 668.3 495 75.4
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 1.0e-189 667.2 496 76.0
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 2.3e-189 666.0 509 73.3
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 8.6e-189 664.1 501 76.2
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 1.1e-188 663.7 494 76.5
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 2.5e-188 662.5 505 75.2
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 2.5e-188 662.5 509 71.1
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 2.1e-187 659.4 500 75.2
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 2.1e-187 659.4 506 72.5
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 2.8e-187 659.1 510 71.6
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 4.7e-187 658.3 494 75.7
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 4.7e-187 658.3 501 75.6
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 2.3e-186 656.0 509 72.7
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 3.1e-186 655.6 509 72.1
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 5.2e-186 654.8 494 73.9
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 6.8e-186 654.4 494 75.1
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 6.8e-186 654.4 497 71.4
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 6.8e-186 654.4 511 74.2
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 2.6e-185 652.5 494 74.1
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 3.4e-185 652.1 498 72.1
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 4.4e-185 651.7 494 73.1
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 9.8e-185 650.6 510 72.2
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 1.7e-184 649.8 510 69.4
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 3.7e-184 648.7 497 73.0
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 8.3e-184 647.5 532 67.1
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 1.1e-183 647.1 521 71.6
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 2.4e-183 646.0 559 64.9
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 2.4e-183 646.0 509 71.7
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 4.1e-183 645.2 509 69.0
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 1.2e-182 643.7 521 71.8
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 2.0e-182 642.9 509 70.9
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 6.0e-182 641.3 494 73.9
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 6.0e-182 641.3 507 72.2
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 5.0e-181 638.3 507 69.6
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 8.6e-181 637.5 494 71.7
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 8.6e-181 637.5 449 75.9
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 8.6e-181 637.5 515 67.2
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 1.9e-180 636.3 499 71.7
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 4.3e-180 635.2 494 72.9
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 9.5e-180 634.0 508 70.5
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 9.5e-180 634.0 525 67.6
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 1.6e-179 633.3 507 71.0
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 2.8e-179 632.5 507 70.0
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 2.3e-178 629.4 508 67.1
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 4.0e-178 628.6 508 67.1
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 6.8e-178 627.9 507 70.6
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 2.0e-177 626.3 507 72.2
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 3.4e-177 625.5 498 70.1
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 2.2e-176 622.9 456 72.4
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 2.2e-176 622.9 494 70.6
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 2.9e-176 622.5 533 68.1
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 6.4e-176 621.3 511 70.3
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 6.4e-176 621.3 529 67.1
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 4.6e-174 615.1 439 74.3
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 4.6e-174 615.1 494 70.9
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 7.3e-172 607.8 521 65.1
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 1.1e-170 604.0 500 68.0
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 5.2e-170 601.7 458 70.7
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 4.4e-169 598.6 494 67.0
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 7.8e-166 587.8 500 64.4
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 5.1e-165 585.1 515 66.4
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 9.6e-164 580.9 433 75.5
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 1.1e-162 577.4 522 65.9
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 9.3e-159 564.3 520 60.6
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 2.7e-158 562.8 512 64.5
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 1.0e-157 560.8 534 62.2
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 9.9e-153 544.3 512 60.7
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 1.2e-142 510.8 422 64.2
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 5.1e-133 478.8 350 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.1e-124 451.1 420 56.9
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 5.3e-122 442.2 470 52.8
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 2.2e-120 436.8 516 48.3
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 6.1e-110 402.1 342 65.2
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.1e-103 381.3 290 69.7
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 1.6e-102 377.5 344 63.7
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 6.3e-99 365.5 339 60.5
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 8.2e-99 365.2 366 54.6
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.5e-95 354.4 294 69.7
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 1.5e-92 344.4 293 68.6
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 2.2e-91 340.5 305 63.0
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.8e-83 313.5 242 64.9
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.8e-83 313.5 242 64.9
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 8.0e-70 268.9 382 44.8
Peaxi162Scf00322g01516 Petunia axillaris HOM05D003771 ORTHO05D004396 4.3e-63 246.5 164 80.5
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 4.3e-63 246.5 329 47.4
unitig_899.g15420 Utricularia gibba HOM05D003771 ORTHO05D004396 9.5e-63 245.4 229 59.8
Solyc05g025750.3 Solanum lycopersicum HOM05D003771 ORTHO05D004396 2.8e-62 243.8 226 66.4
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 3.2e-58 230.3 189 65.6
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 8.1e-54 215.7 141 78.0
Lsat_1_v5_gn_8_70001 Lactuca sativa HOM05D003771 ORTHO05D004396 1.1e-50 205.3 176 64.2
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 4.1e-50 203.4 190 57.9
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 8.1e-46 189.1 167 61.7
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 9.3e-42 175.6 159 59.7
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 2.1e-41 174.5 143 65.0
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 6.4e-35 152.9 151 58.9
TAR633G1498 Trochodendron aralioides HOM05D003771 ORTHO05D004396 5.1e-32 143.3 151 59.6
Oeu036959.1 Olea europaea HOM05D003771 ORTHO05D004396 4.8e-30 136.7 92 79.3
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.2e-26 124.0 168 43.5
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.2e-26 124.0 168 43.5
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 3.3e-23 114.0 400 26.5
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 4.3e-23 113.6 71 76.1
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 3.4e-20 104.0 87 64.4
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 1.4e-13 82.0 73 58.9
Zm00001eb236470 Zea mays HOM05D003771 ORTHO05D004396 6.3e-06 56.6 72 44.4


User provided reference genes

Program Settings