Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 1.7e-65 254.2 424 100.0
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 1.5e-64 251.1 424 98.1
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 1.3e-52 211.5 215 96.3
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 6.4e-52 209.1 215 91.2
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 2.7e-50 203.8 114 100.0
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 3.1e-38 163.7 114 72.8
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 6.7e-33 146.0 114 70.2
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 7.7e-29 132.5 83 79.5
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 7.7e-29 132.5 83 79.5
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 1.3e-28 131.7 83 79.5
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 8.5e-28 129.0 127 56.7
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 1.9e-27 127.9 127 55.9
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.2e-27 127.1 81 77.8
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 4.3e-24 116.7 80 73.8
Carub.0002s0787 Capsella rubella HOM05D000162 ORTHO05D003288 4.3e-24 116.7 114 64.0
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 8.2e-23 112.5 80 72.5
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 1.8e-22 111.3 68 79.4
C01p39860 Brassica napus HOM05D000162 ORTHO05D003288 5.3e-22 109.8 72 77.8
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.1e-22 109.0 72 76.4
BolC5t33057H Brassica oleracea HOM05D000162 ORTHO05D003288 3.4e-21 107.1 74 71.6
AT1G63150 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 7.7e-21 105.9 114 60.5
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 1.7e-20 104.8 110 52.7
C08p47400 Brassica napus HOM05D000162 ORTHO05D003288 2.2e-20 104.4 71 76.1
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 3.8e-20 103.6 98 58.2
Carub.0001s1249 Capsella rubella HOM05D000162 ORTHO05D000090 2.5e-19 100.9 72 72.2
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 3.2e-19 100.5 116 52.6
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 1.2e-18 98.6 113 59.3
BcaB03g11740 Brassica carinata HOM05D000162 ORTHO05D003288 1.6e-18 98.2 100 54.0
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 2.7e-18 97.4 112 50.9
BolC1t03937H Brassica oleracea HOM05D000162 ORTHO05D003288 6.1e-18 96.3 113 60.2
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 7.9e-18 95.9 78 62.8
BcaC05g28279 Brassica carinata HOM05D000162 ORTHO05D003288 2.3e-17 94.4 94 54.3
C05p43270 Brassica napus HOM05D000162 ORTHO05D003288 2.3e-17 94.4 94 54.3
A09p13890 Brassica napus HOM05D000162 ORTHO05D003288 5.1e-17 93.2 114 57.0
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.0e-16 91.3 81 58.0
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.3e-16 90.5 77 61.0
C05p38870 Brassica napus HOM05D000162 ORTHO05D003288 4.4e-16 90.1 70 65.7
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 5.7e-16 89.7 112 55.4
BcaB08g34255 Brassica carinata HOM05D000162 ORTHO05D003288 2.2e-15 87.8 54 83.3
CARHR055290 Cardamine hirsuta HOM05D000162 ORTHO05D003288 8.2e-15 85.9 69 60.9
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 1.1e-14 85.5 49 83.7
Thhalv10015983m.g Eutrema salsugineum HOM05D000162 ORTHO05D003288 1.4e-14 85.1 83 56.6
CARHR048540 Cardamine hirsuta HOM05D000162 ORTHO05D003288 3.5e-13 80.5 70 58.6
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 4.5e-13 80.1 54 74.1
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 1.0e-12 79.0 50 82.0
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 1.0e-12 79.0 50 82.0
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 1.0e-12 79.0 50 82.0
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 1.3e-12 78.6 49 79.6
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 2.2e-12 77.8 53 73.6
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 2.9e-12 77.4 53 73.6
BraA09t41809Z Brassica rapa HOM05D000162 ORTHO05D003288 3.8e-12 77.0 54 72.2
A09p13590 Brassica napus HOM05D000162 ORTHO05D003288 5.0e-12 76.6 61 60.7
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 5.0e-12 76.6 55 70.9
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 5.0e-12 76.6 55 70.9
BolC3t17765H Brassica oleracea HOM05D000162 ORTHO05D003288 1.1e-11 75.5 114 43.0
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.9e-11 74.7 76 47.4
BolC3t21476H Brassica oleracea HOM05D000162 ORTHO05D003288 7.2e-11 72.8 68 52.9
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.2e-11 72.8 68 51.5
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.2e-11 72.8 68 51.5
Thhalv10020312m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.4e-11 72.4 52 73.1
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 1.6e-10 71.6 75 46.7
Carub.0001s1231 Capsella rubella HOM05D000162 ORTHO05D000090 2.7e-10 70.9 50 70.0
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 4.7e-10 70.1 75 46.7
BcaB08g37458 Brassica carinata HOM05D066748 ORTHO05D012488 6.1e-10 69.7 41 75.6
FvH4_3g39650 Fragaria vesca HOM05D000162 ORTHO05D003288 8.0e-10 69.3 78 46.2
BcaC01g03204 Brassica carinata HOM05D000162 ORTHO05D003288 1.0e-09 68.9 78 50.0
CARHR051050 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.0e-09 68.9 53 64.2
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 1.0e-09 68.9 72 44.4
AUR62000354 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.8e-09 68.2 81 43.2
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 3.0e-09 67.4 43 79.1
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 3.0e-09 67.4 43 79.1
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 5.2e-09 66.6 74 43.2
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 5.2e-09 66.6 53 64.2
Thhalv10002441m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 6.7e-09 66.2 43 79.1
AL3G36780 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.8e-09 65.9 50 70.0
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 8.8e-09 65.9 89 38.2
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 8.8e-09 65.9 68 45.6
RcHm_v2.0_Chr5g0074181 Rosa chinensis HOM05D009709 ORTHO05D003288 8.8e-09 65.9 80 43.8
CARHR048230 Cardamine hirsuta HOM05D038018 ORTHO05D003288 1.1e-08 65.5 62 58.1
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 1.1e-08 65.5 69 47.8
RcHm_v2.0_Chr5g0072871 Rosa chinensis HOM05D009709 ORTHO05D003288 1.1e-08 65.5 76 44.7
Sp2g01710 Schrenkiella parvula HOM05D000162 ORTHO05D003288 1.1e-08 65.5 78 44.9
AT1G62590 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.5e-08 65.1 54 63.0
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 1.5e-08 65.1 39 82.1
AUR62006890 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.5e-08 65.1 81 42.0
AL2G12380 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 2.0e-08 64.7 53 60.4
CARHR051150 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.0e-08 64.7 53 60.4
Thhalv10007258m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.0e-08 64.7 41 80.5
Potri.005G046050 Populus trichocarpa HOM05D009709 ORTHO05D003288 2.6e-08 64.3 69 44.9
Carub.0002s0148 Capsella rubella HOM05D000162 ORTHO05D003288 3.3e-08 63.9 53 60.4
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.3e-08 63.9 112 36.6
Thhalv10023344m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.3e-08 63.9 54 59.3
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 3.3e-08 63.9 68 44.1
AT1G63330 Arabidopsis thaliana HOM05D000162 ORTHO05D003288 4.4e-08 63.5 53 62.3
BcaC07g41727 Brassica carinata HOM05D000162 ORTHO05D000090 4.4e-08 63.5 38 78.9
CARHR012890 Cardamine hirsuta HOM05D000162 ORTHO05D003288 4.4e-08 63.5 47 66.0
HanXRQChr03g0090811 Helianthus annuus HOM05D000162 ORTHO05D003288 4.4e-08 63.5 79 39.2
CARHR048780 Cardamine hirsuta HOM05D000162 ORTHO05D003288 5.7e-08 63.2 53 58.5
AL2G18840 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.7e-08 62.4 54 59.3
AUR62000378 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.7e-08 62.4 78 42.3
AUR62000665 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.7e-08 62.4 112 39.3
BraA09t37012Z Brassica rapa HOM05D000162 ORTHO05D003288 1.7e-07 61.6 102 48.0
BraA09t37036Z Brassica rapa HOM05D000162 ORTHO05D003288 1.7e-07 61.6 52 61.5
Carub.0002s0192 Capsella rubella HOM05D000162 ORTHO05D003288 1.7e-07 61.6 53 62.3
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.7e-07 61.6 109 33.0
FAN16G3455 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.2e-07 61.2 77 44.2
HanXRQChr13g0420261 Helianthus annuus HOM05D022346 ORTHO05D003288 2.2e-07 61.2 108 34.3
C09p16260 Brassica napus HOM05D000162 ORTHO05D003288 2.8e-07 60.8 53 60.4
BolC9t54536H Brassica oleracea HOM05D000162 ORTHO05D003288 2.8e-07 60.8 53 60.4
CARHR048080 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.8e-07 60.8 54 61.1
CARHR048470 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.8e-07 60.8 48 60.4
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.8e-07 60.8 109 33.0
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 3.7e-07 60.5 80 37.5
CARHR046830 Cardamine hirsuta HOM05D000162 ORTHO05D003288 6.3e-07 59.7 50 60.0
AUR62000844 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.3e-07 59.7 112 33.0
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 6.3e-07 59.7 105 35.2
AUR62005214 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.3e-07 59.7 105 35.2
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 6.3e-07 59.7 98 33.7
BraA09t41633Z Brassica rapa HOM05D000162 ORTHO05D003288 1.1e-06 58.9 32 87.5
Carub.0002s0209 Capsella rubella HOM05D000162 ORTHO05D003288 1.1e-06 58.9 53 58.5
Thhalv10023987m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.1e-06 58.9 43 69.8
AL2G12830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.4e-06 58.5 46 63.0
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.4e-06 58.5 111 33.3
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.4e-06 58.5 105 30.5
THA.LOC104814143 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.4e-06 58.5 51 52.9
Thhalv10023976m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.8e-06 58.2 43 67.4
FAN18G0982 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.8e-06 58.2 68 41.2
AUR62000690 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.4e-06 57.8 97 36.1
AUR62005276 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.4e-06 57.8 112 41.1
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.4e-06 57.8 68 44.1
HanXRQChr15g0491421 Helianthus annuus HOM05D022346 ORTHO05D003288 2.4e-06 57.8 109 32.1
BcaB08g34253 Brassica carinata HOM05D000162 ORTHO05D000090 3.1e-06 57.4 33 81.8
Thhalv10023354m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.1e-06 57.0 46 63.0
BcaC07g41684 Brassica carinata HOM05D000162 ORTHO05D000090 5.3e-06 56.6 32 84.4
C08p47150 Brassica napus HOM05D000162 ORTHO05D000090 5.3e-06 56.6 32 84.4
BolC8t52254H Brassica oleracea HOM05D000162 ORTHO05D000090 5.3e-06 56.6 32 84.4
AUR62000691 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.3e-06 56.6 112 38.4
AUR62007002 Chenopodium quinoa HOM05D000162 ORTHO05D000090 5.3e-06 56.6 109 39.4
AL2G12510 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 7.0e-06 56.2 114 37.7
AUR62000710 Chenopodium quinoa HOM05D000162 ORTHO05D003288 7.0e-06 56.2 95 30.5
AUR62005303 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.0e-06 56.2 112 40.2
THA.LOC104803570 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 7.0e-06 56.2 39 66.7
AL1G24190 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.1e-06 55.8 34 79.4
Thhalv10023350m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.1e-06 55.8 42 66.7
Thhalv10023351m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.1e-06 55.8 46 63.0
HanXRQChr13g0415191 Helianthus annuus HOM05D022346 ORTHO05D003288 9.1e-06 55.8 81 33.3


User provided reference genes

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