Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1577.4 832 100.0
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1574.7 832 99.8
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1568.5 832 99.6
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1552.3 833 98.3
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1548.5 833 98.3
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1543.1 836 97.8
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1500.3 834 95.0
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1498.0 838 94.5
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1489.9 835 93.9
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1489.6 838 93.8
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1488.4 838 93.8
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1487.2 838 93.9
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1487.2 836 93.7
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1483.8 838 93.9
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1432.2 838 90.5
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1412.5 839 87.8
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1284.6 839 79.7
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 842 78.6
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 836 79.8
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1281.2 836 79.4
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1279.6 842 79.0
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1275.0 841 78.4
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1270.0 838 78.9
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1269.2 842 78.4
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1264.6 841 77.9
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1263.1 841 77.6
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1261.1 840 76.9
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1260.0 836 78.6
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1257.3 838 77.8
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1256.9 837 77.3
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1256.5 841 77.3
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1256.1 839 77.5
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1254.6 840 77.6
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1254.2 841 76.8
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1253.8 838 77.3
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1253.8 836 78.2
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1251.1 836 77.9
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1248.0 841 77.9
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1248.0 840 77.3
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1246.5 842 76.7
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1243.0 841 77.5
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1240.3 842 76.5
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1233.4 860 75.5
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1229.2 841 75.6
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1224.9 839 75.1
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1223.0 839 75.6
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1221.8 839 76.3
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1221.5 839 75.3
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1220.3 840 76.0
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1219.9 842 75.3
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1215.3 840 75.5
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1213.7 839 75.6
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1213.4 930 69.8
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1210.7 840 75.7
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1208.7 841 74.9
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1208.4 832 75.7
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1207.2 840 75.7
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1206.4 840 75.5
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1204.9 849 73.9
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1204.1 840 74.4
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1203.3 840 75.5
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1200.7 840 74.8
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1197.2 841 74.7
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1193.3 842 73.0
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1189.9 836 75.4
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1188.7 839 73.4
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1187.6 844 73.3
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1187.2 841 73.4
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1185.2 835 73.9
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1184.9 837 74.1
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1179.1 840 72.3
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1175.6 840 72.1
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1175.2 838 73.3
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1174.1 837 72.9
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1172.9 842 72.6
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1170.2 851 72.6
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1168.3 839 71.8
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1167.5 851 72.7
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1167.5 839 72.8
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1159.4 835 72.7
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1157.9 833 71.7
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1156.0 859 71.1
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1153.7 842 71.0
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1152.5 859 70.9
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1148.7 839 70.4
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1134.4 840 69.9
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1134.0 808 73.5
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1125.9 841 69.7
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1113.2 859 68.9
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1110.1 859 70.1
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1104.4 840 69.4
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1094.7 726 79.1
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1088.9 841 69.2
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1088.9 746 75.2
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1082.4 1001 60.1
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 3.9e-303 1044.6 840 65.1
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 1.9e-286 989.2 834 65.3
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.0e-282 976.9 718 69.4
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 4.6e-280 968.0 541 94.3
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 1.1e-278 963.4 683 73.6
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.6e-264 916.4 621 80.4
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 5.3e-252 874.8 856 54.8
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 4.0e-247 858.6 854 54.7
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 4.0e-231 805.4 833 52.7
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 3.5e-227 792.3 519 77.3
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.0e-214 750.0 750 54.8
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.7e-213 745.7 546 70.5
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.1e-207 726.1 511 75.0
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.1e-207 726.1 613 63.1
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 2.2e-197 693.3 901 45.8
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 5.8e-182 642.1 555 63.1
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 8.7e-178 628.2 444 76.1
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.1e-177 627.9 424 78.5
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.2e-165 587.0 440 70.9
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 7.0e-151 538.9 344 79.9
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 2.0e-145 520.8 397 68.3
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.7e-144 517.7 293 92.8
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.6e-139 500.0 378 69.6
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 1.1e-124 451.8 235 98.7
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 2.2e-120 437.6 235 95.7
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.1e-119 435.3 372 64.2
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 2.5e-116 424.1 338 64.2
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 2.7e-102 377.5 428 51.6
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.2e-99 368.6 256 72.7
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 1.1e-95 355.5 855 30.8
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.3e-77 294.7 211 68.2
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.5e-73 282.0 855 27.1
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.0e-64 252.7 266 54.5
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 9.6e-60 236.1 201 64.2
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 1.3e-59 235.7 122 95.9
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.3e-59 235.7 232 61.6
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 4.5e-57 227.3 290 47.2
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 4.2e-55 220.7 177 67.8
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 4.5e-49 200.7 130 72.3
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 3.8e-48 197.6 104 98.1
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 1.9e-47 195.3 210 59.5
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 2.5e-47 194.9 104 97.1
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 7.4e-44 183.3 96 94.8
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 9.7e-44 183.0 96 96.9
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 1.3e-40 172.6 112 80.4
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 8.8e-37 159.8 106 82.1
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 2.8e-35 154.8 97 76.3
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.1e-34 152.9 95 78.9
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.0e-32 146.4 95 74.7
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 3.0e-29 134.8 95 71.6
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 2.0e-28 132.1 228 39.9
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 1.2e-25 122.9 130 50.8
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 6.5e-24 117.1 87 74.7
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 1.0e-21 109.8 145 46.2
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 3.0e-21 108.2 225 35.1
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 2.6e-20 105.1 220 34.5
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 3.4e-20 104.8 210 36.2
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.3e-19 102.8 82 64.6
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.7e-19 101.3 99 46.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.2e-17 96.3 70 65.7
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.2e-16 92.0 72 68.1
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 3.6e-14 84.7 75 64.0
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 7.0e-10 70.5 58 62.1
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 9.2e-10 70.1 158 33.5
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.1e-07 63.2 65 49.2
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 2.1e-06 58.9 54 53.7


User provided reference genes

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