Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 7.1e-96 354.0 185 100.0
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 5.1e-86 321.2 183 95.6
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 5.1e-86 321.2 183 95.6
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 5.1e-86 321.2 183 95.6
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 5.1e-86 321.2 183 95.6
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 5.1e-86 321.2 183 95.6
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 9.6e-85 317.0 181 95.0
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 1.2e-84 316.6 183 94.5
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 1.2e-84 316.6 183 94.5
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-84 316.2 183 94.5
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-84 316.2 183 94.5
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-84 316.2 183 94.5
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-84 316.2 183 94.5
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-84 316.2 183 94.5
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 8.1e-84 313.9 181 94.5
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.5e-82 309.7 183 94.0
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 1.2e-79 300.1 182 89.0
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.9e-63 244.2 180 72.8
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.9e-63 244.2 180 72.8
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.7e-62 240.7 180 71.1
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 6.2e-60 234.6 178 72.5
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-58 229.9 178 70.2
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-58 229.9 178 70.2
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-58 229.9 178 70.2
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-58 229.9 178 70.2
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 4.5e-58 228.4 178 73.0
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 1.3e-57 226.9 178 70.8
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-57 226.1 178 69.1
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.9e-57 225.7 178 69.7
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.9e-57 225.7 178 69.7
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.4e-56 223.4 177 68.4
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 2.5e-56 222.6 178 69.7
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-53 213.8 181 66.3
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-53 213.8 181 66.3
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-53 213.8 181 66.3
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-53 213.8 181 66.3
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-53 213.8 181 66.3
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-53 213.8 181 66.3
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 4.3e-53 211.8 170 68.8
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 4.3e-53 211.8 170 68.8
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-52 210.3 170 68.8
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.6e-52 209.9 178 65.7
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 2.8e-52 209.1 178 66.9
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 3.7e-52 208.8 169 68.0
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 3.7e-52 208.8 190 63.7
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 8.2e-52 207.6 178 65.2
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 5.3e-51 204.9 178 65.7
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 4.5e-50 201.8 170 67.6
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 5.9e-50 201.4 176 64.2
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 5.9e-50 201.4 184 63.0
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 3.8e-49 198.7 178 64.0
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.6e-47 192.2 150 69.3
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 5.1e-46 188.3 149 68.5
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-45 187.2 134 72.4
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 1.5e-45 186.8 113 91.2
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 7.4e-45 184.5 178 59.6
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.6e-44 183.3 179 57.0
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 4.8e-44 181.8 140 67.1
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.4e-43 180.3 169 63.3
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.0e-42 176.4 180 57.8
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 2.2e-41 172.9 181 58.0
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 2.1e-39 166.4 97 92.8
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 2.6e-37 159.5 143 58.7
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-37 159.1 90 92.2
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.7e-36 156.8 132 62.9
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 7.7e-34 147.9 130 64.6
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.4e-32 143.7 113 62.8
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 3.2e-32 142.5 142 55.6
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-28 130.6 185 48.1
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.2e-28 129.8 172 48.8
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 8.2e-28 127.9 113 61.9
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.2e-26 124.0 93 73.1
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.5e-24 117.1 128 50.8
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.5e-24 117.1 128 50.8
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.5e-24 117.1 128 50.8
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.5e-24 117.1 128 50.8
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.5e-24 117.1 128 50.8
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 1.9e-24 116.7 99 63.6
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.9e-24 116.7 160 45.6
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 4.2e-24 115.5 117 59.8
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 8.0e-23 111.3 60 95.0
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 2.0e-21 106.7 88 65.9
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 4.4e-21 105.5 86 66.3
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 4.4e-21 105.5 78 71.8
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.7e-20 103.6 69 79.7
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 1.4e-19 100.5 102 56.9
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.4e-19 99.8 110 51.8
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-18 97.4 110 50.9
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.2e-18 97.4 115 46.1
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.7e-18 96.3 132 43.9
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 2.2e-17 93.2 115 43.5
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 2.9e-17 92.8 83 60.2
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 3.8e-17 92.4 76 68.4
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 4.7e-15 85.5 68 70.6
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.0e-14 84.3 61 73.8
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 5.7e-13 78.6 49 85.7
BolC7t43853H Brassica oleracea HOM05D005034 ORTHO05D006234 9.1e-11 71.2 51 84.3
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 2.7e-10 69.7 52 71.2
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 1.3e-09 67.4 118 43.2
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.8e-09 65.9 48 72.9
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 5.0e-09 65.5 47 72.3
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 1.9e-08 63.5 39 82.1
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 1.9e-08 63.5 39 82.1
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 1.9e-08 63.5 39 82.1
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 1.9e-08 63.5 39 82.1
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.1e-07 60.1 45 66.7
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 8.0e-07 58.2 56 53.6
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 1.0e-06 57.8 39 74.4
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-06 56.2 42 71.4
BolC9t56808H Brassica oleracea HOM05D005034 ORTHO05D106437 5.2e-06 55.5 31 90.3
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 5.2e-06 55.5 35 80.0
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 6.8e-06 55.1 42 69.0
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 6.8e-06 55.1 42 69.0


User provided reference genes

Program Settings