Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-44 182.2 102 100.0
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 99.0
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 1.5e-42 176.0 102 96.1
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 7.2e-42 173.7 102 95.1
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 6.7e-40 167.2 102 92.2
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 9.7e-39 163.3 102 90.2
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 9.7e-39 163.3 102 90.2
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 9.7e-39 163.3 102 90.2
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 9.7e-39 163.3 102 90.2
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 8.2e-38 160.2 102 88.2
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-37 159.8 102 88.2
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-37 159.8 102 88.2
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-37 159.8 102 88.2
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-37 159.8 102 88.2
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-37 159.8 102 88.2
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-37 159.8 102 88.2
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.4e-37 159.5 102 87.3
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.4e-37 159.5 102 87.3
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.4e-37 159.5 102 87.3
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.4e-37 159.5 102 87.3
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-37 159.5 101 88.1
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 1.4e-37 159.5 101 88.1
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-37 159.5 101 88.1
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 1.4e-37 159.5 102 88.2
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.8e-37 159.1 102 88.2
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.8e-37 159.1 102 88.2
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.8e-37 159.1 102 88.2
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.1e-37 158.3 102 87.3
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 5.3e-37 157.5 102 87.3
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 5.3e-37 157.5 102 87.3
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 5.3e-37 157.5 102 87.3
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 1.2e-36 156.4 102 85.3
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.2e-36 156.4 102 85.3
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 3.5e-36 154.8 102 87.3
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 4.5e-36 154.5 102 86.3
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 7.7e-36 153.7 100 86.0
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.0e-35 153.3 102 84.3
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 1.0e-35 153.3 102 85.3
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 2.9e-35 151.8 102 84.3
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.2e-34 148.3 102 83.3
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 5.5e-34 147.5 102 83.3
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 5.5e-34 147.5 102 83.3
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 5.5e-34 147.5 102 83.3
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 5.5e-34 147.5 102 81.4
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.1e-33 145.6 102 82.4
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 4.7e-33 144.4 102 83.3
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 6.1e-33 144.1 95 86.3
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.0e-32 143.3 102 78.4
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 3.0e-32 141.7 92 85.9
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 3.0e-32 141.7 92 85.9
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.8e-32 140.2 102 77.5
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 1.2e-31 139.8 98 76.5
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 2.6e-31 138.7 101 78.2
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.4e-31 137.9 95 83.2
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 5.7e-31 137.5 93 81.7
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 5.7e-31 137.5 93 81.7
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.7e-30 134.8 91 85.7
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 1.2e-28 129.8 82 85.4
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 7.7e-28 127.1 102 78.4
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 7.7e-28 127.1 102 78.4
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 1.9e-26 122.5 104 73.1
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 1.2e-25 119.8 67 95.5
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 1.6e-25 119.4 65 98.5
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 5.2e-24 114.4 102 73.5
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 7.5e-23 110.5 102 69.6
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 8.3e-22 107.1 67 91.0
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 1.4e-21 106.3 101 68.3
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 1.8e-21 105.9 59 96.6
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 7.8e-20 100.5 66 81.8
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 2.9e-19 98.6 66 80.3
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-18 95.9 62 82.3
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 3.3e-18 95.1 66 77.3
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 5.6e-18 94.4 74 74.3
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 2.8e-17 92.0 52 98.1
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 2.8e-17 92.0 52 98.1
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 2.8e-17 92.0 77 70.1
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 6.1e-17 90.9 62 82.3
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-16 90.1 51 98.0
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.0e-16 90.1 76 71.1
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.3e-16 89.0 75 70.7
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 4.0e-16 88.2 66 71.2
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 6.8e-16 87.4 53 96.2
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 1.2e-15 86.7 51 96.1
Lsat_1_v5_gn_6_54101 Lactuca sativa HOM05D001200 ORTHO05D009778 1.2e-15 86.7 75 70.7
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 1.5e-15 86.3 59 81.4
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 2.0e-15 85.9 96 62.5
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.4e-15 84.7 57 78.9
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-14 82.4 54 79.6
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 4.9e-14 81.3 102 56.9
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 4.9e-14 81.3 77 67.5
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 1.2e-12 76.6 46 93.5
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 6.6e-11 70.9 41 92.7
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 1.5e-10 69.7 52 73.1
SMO086G0019 Selaginella moellendorffii HOM05D001200 ORTHO05D009778 2.8e-09 65.5 100 46.0
C05p35930 Brassica napus HOM05D000001 ORTHO05D024436 5.2e-08 61.2 32 93.8
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 4.4e-07 58.2 43 67.4
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 4.4e-07 58.2 41 70.7


User provided reference genes

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