Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t56687H Brassica oleracea HOM05D006764 ORTHO05D008516 1.8e-159 565.8 277 100.0
C09p38380 Brassica napus HOM05D006764 ORTHO05D008516 4.0e-143 511.5 298 86.9
BcaC04g20869 Brassica carinata HOM05D006764 ORTHO05D008516 6.8e-143 510.8 250 100.0
A09p30490 Brassica napus HOM05D006764 ORTHO05D008516 1.3e-138 496.5 251 97.6
BraA09t38619Z Brassica rapa HOM05D006764 ORTHO05D008516 1.3e-138 496.5 251 97.6
BcaB01g01263 Brassica carinata HOM05D006764 ORTHO05D008516 5.6e-129 464.5 250 91.2
AL6G41260 Arabidopsis lyrata HOM05D006764 ORTHO05D008516 6.8e-119 431.0 250 83.2
AT4G06676 Arabidopsis thaliana HOM05D006764 ORTHO05D008516 9.2e-116 420.6 250 82.8
CARHR260060 Cardamine hirsuta HOM05D006764 ORTHO05D008516 2.3e-114 416.0 250 81.2
Carub.0006s2639 Capsella rubella HOM05D006764 ORTHO05D008516 2.6e-110 402.5 250 79.6
Thhalv10028801m.g Eutrema salsugineum HOM05D006764 ORTHO05D008516 9.8e-110 400.6 250 80.4
THA.LOC104807147 Tarenaya hassleriana HOM05D006764 ORTHO05D008516 1.9e-100 369.8 251 74.5
Sp6g10710 Schrenkiella parvula HOM05D006764 ORTHO05D008516 2.7e-99 365.9 250 74.4
Aa31LG3G14080 Aethionema arabicum HOM05D006764 ORTHO05D008516 2.2e-93 346.3 266 69.2
GSVIVG01023281001 Vitis vinifera HOM05D006764 ORTHO05D008516 4.3e-89 332.0 253 66.4
CiPaw.05G051400 Carya illinoinensis HOM05D006764 ORTHO05D008516 1.6e-88 330.1 251 65.7
Gohir.D04G175300 Gossypium hirsutum HOM05D006764 ORTHO05D008516 1.4e-87 327.0 253 63.2
MD08G1240100 Malus domestica HOM05D006764 ORTHO05D008516 1.4e-87 327.0 251 63.7
PGR042G2798 Punica granatum HOM05D006764 ORTHO05D008516 3.1e-87 325.9 251 63.3
Potri.004G222300 Populus trichocarpa HOM05D006764 ORTHO05D008516 4.0e-87 325.5 250 66.4
RcHm_v2.0_Chr7g0220831 Rosa chinensis HOM05D006764 ORTHO05D008516 5.3e-87 325.1 253 62.8
Gorai.012G166600 Gossypium raimondii HOM05D006764 ORTHO05D008516 6.9e-87 324.7 253 62.8
Prupe.1G576600 Prunus persica HOM05D006764 ORTHO05D008516 1.2e-86 323.9 250 65.2
Gohir.A04G130100 Gossypium hirsutum HOM05D006764 ORTHO05D008516 3.4e-86 322.4 253 62.5
Dinv01845 Davidia involucrata HOM05D006764 ORTHO05D008516 4.4e-86 322.0 250 63.2
QL02p099872 Quercus lobata HOM05D006764 ORTHO05D008516 7.6e-86 321.2 251 63.7
MD15G1432200 Malus domestica HOM05D006764 ORTHO05D008516 9.9e-86 320.9 251 63.7
FvH4_5g28680 Fragaria vesca HOM05D006764 ORTHO05D008516 8.4e-85 317.8 251 63.3
Actinidia39013 Actinidia chinensis HOM05D006764 ORTHO05D008516 1.9e-84 316.6 250 63.2
Thecc.02G025400 Theobroma cacao HOM05D006764 ORTHO05D008516 1.9e-84 316.6 250 62.8
TAR628G0031 Trochodendron aralioides HOM05D006764 ORTHO05D008516 3.2e-84 315.8 253 62.5
Atru.chr6.751 Acer truncatum HOM05D006764 ORTHO05D008516 5.4e-84 315.1 254 63.8
Manes.07G022500 Manihot esculenta HOM05D006764 ORTHO05D008516 5.4e-84 315.1 252 64.3
Oeu023412.2 Olea europaea HOM05D006764 ORTHO05D008516 9.3e-84 314.3 253 62.5
Lj6g0021331 Lotus japonicus HOM05D006764 ORTHO05D008516 8.7e-82 307.8 255 62.7
CSS0013576 Camellia sinensis var. sinensis HOM05D006764 ORTHO05D008516 1.1e-81 307.4 250 62.8
Glyma.12G168200 Glycine max HOM05D006764 ORTHO05D008516 1.1e-81 307.4 255 61.2
ClCG11G013370 Citrullus lanatus HOM05D006764 ORTHO05D008516 1.5e-81 307.0 250 61.2
Cc02_g22970 Coffea canephora HOM05D006764 ORTHO05D008516 2.5e-81 306.2 253 59.3
Psat1g221840 Pisum sativum HOM05D006764 ORTHO05D008516 3.3e-81 305.8 250 60.4
Medtr2g006100 Medicago truncatula HOM05D006764 ORTHO05D008516 5.6e-81 305.1 250 60.8
arahy.Tifrunner.gnm1.ann1.0E87YT Arachis hypogaea HOM05D006764 ORTHO05D008516 7.4e-81 304.7 251 59.8
arahy.Tifrunner.gnm1.ann1.FMX4TW Arachis hypogaea HOM05D006764 ORTHO05D008516 7.4e-81 304.7 251 59.8
EL10Ac6g14065 Beta vulgaris HOM05D006764 ORTHO05D008516 1.3e-80 303.9 251 60.6
Glyma.16G004200 Glycine max HOM05D006764 ORTHO05D008516 1.6e-80 303.5 253 60.5
SGA_v2.0_scaffold304G47898 Striga asiatica HOM05D006764 ORTHO05D008516 1.6e-80 303.5 257 61.9
vmacro01728 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 2.8e-80 302.8 257 59.5
Ciclev10001742m.g Citrus clementina HOM05D006764 ORTHO05D008516 1.4e-79 300.4 253 61.3
CsaV3_5G029880 Cucumis sativus L. HOM05D006764 ORTHO05D008516 1.4e-79 300.4 250 59.6
TPR.G2075 Trifolium pratense HOM05D006764 ORTHO05D008516 2.4e-79 299.7 250 60.4
MELO3C011834.2 Cucumis melo HOM05D006764 ORTHO05D008516 4.0e-79 298.9 250 59.2
VMungo0540G1274 Vigna mungo HOM05D006764 ORTHO05D008516 4.0e-79 298.9 250 59.6
Eucgr.G00355 Eucalyptus grandis HOM05D006764 ORTHO05D008516 5.3e-79 298.5 251 59.0
Phvul.006G217900 Phaseolus vulgaris HOM05D006764 ORTHO05D008516 6.9e-79 298.1 253 58.9
Rhsim11G0125600 Rhododendron simsii HOM05D006764 ORTHO05D008516 1.2e-78 297.4 253 60.5
CANSAT54G1059 Cannabis sativa HOM05D006764 ORTHO05D008516 1.7e-77 293.5 254 57.1
PSO170G2545 Papaver somniferum HOM05D006764 ORTHO05D008516 6.4e-77 291.6 251 57.4
Nn5g27693 Nelumbo nucifera HOM05D006764 ORTHO05D008516 1.4e-76 290.4 253 58.5
Sc16g0001680 Simmondsia chinensis HOM05D006764 ORTHO05D008516 1.4e-76 290.4 253 58.5
ECA234G3405 Erigeron canadensis HOM05D006764 ORTHO05D008516 3.2e-76 289.3 250 58.0
HanXRQChr10g0294521 Helianthus annuus HOM05D006764 ORTHO05D008516 5.5e-76 288.5 250 59.2
Sabra01G0168400 Salix brachista HOM05D006764 ORTHO05D008516 5.5e-76 288.5 250 60.4
Sopen10g013910 Solanum pennellii HOM05D006764 ORTHO05D008516 2.7e-75 286.2 255 57.3
Lalb_Chr18g0061021 Lupinus albus HOM05D006764 ORTHO05D008516 3.5e-75 285.8 246 59.3
Solyc10g044910.2 Solanum lycopersicum HOM05D006764 ORTHO05D008516 5.1e-74 282.0 255 56.9
HPP92_009268 Vanilla planifolia HOM05D006764 ORTHO05D008516 8.7e-74 281.2 248 54.8
TWI59G0639 Tripterygium wilfordii HOM05D006764 ORTHO05D008516 5.6e-73 278.5 255 59.2
FAN13G1303 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.2e-70 270.8 280 53.6
Aqoxy6G00131 Aquilegia oxysepala HOM05D006764 ORTHO05D008516 5.8e-70 268.5 252 51.6
FAN18G3575 Fragaria x ananassa HOM05D006764 ORTHO05D008516 3.8e-69 265.8 251 56.6
unitig_748.g8283 Utricularia gibba HOM05D006764 ORTHO05D008516 8.4e-69 264.6 253 55.7
FAN08G1175 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.4e-68 263.8 266 54.9
Nitab4.5_0000667g0120 Nicotiana tabacum HOM05D006764 ORTHO05D008516 9.3e-68 261.2 260 51.9
MBI17_g21477_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 6.0e-67 258.5 249 53.4
Ca_00050_v3 Cicer arietinum L. HOM05D006764 ORTHO05D008516 2.8e-64 249.6 241 53.5
AUR62042713 Chenopodium quinoa HOM05D006764 ORTHO05D008516 2.0e-62 243.4 251 51.4
ATR0709G017 Amborella trichopoda HOM05D006764 ORTHO05D008516 4.5e-62 242.3 247 50.6
Migut.B00802 Erythranthe guttata HOM05D006764 ORTHO05D008516 4.5e-62 242.3 247 54.3
SEGI_07291 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 2.2e-61 240.0 255 49.4
CAN.G1108.5 Capsicum annuum HOM05D006764 ORTHO05D008516 7.9e-59 231.5 205 57.1
Zm00001eb082660 Zea mays HOM05D006764 ORTHO05D008516 7.9e-59 231.5 253 49.0
Duzib132G0537 Durio zibethinus HOM05D006764 ORTHO05D008516 2.3e-58 229.9 247 50.6
COL.COLO4_17757 Corchorus olitorius HOM05D006764 ORTHO05D008516 2.8e-56 223.0 260 51.5
Nitab4.5_0008098g0020 Nicotiana tabacum HOM05D006764 ORTHO05D008516 4.8e-56 222.2 243 48.6
Mapoly0025s0102 Marchantia polymorpha HOM05D006764 ORTHO05D008516 3.8e-53 212.6 240 42.5
Peaxi162Scf00002g00261 Petunia axillaris HOM05D006764 ORTHO05D008516 1.9e-52 210.3 252 46.0
Pp3c15_15530 Physcomitrium patens HOM05D006764 ORTHO05D008516 1.6e-51 207.2 245 41.2
SHI04828 Sapria himalayana HOM05D006764 ORTHO05D008516 6.3e-48 195.3 194 53.1
PSO017G2259 Papaver somniferum HOM05D006764 ORTHO05D008516 2.4e-47 193.4 158 60.1
DCAR_029270 Daucus carota HOM05D006764 ORTHO05D008516 7.7e-46 188.3 189 54.0
Lsat_1_v5_gn_5_103781 Lactuca sativa HOM05D006764 ORTHO05D008516 6.5e-45 185.3 165 58.2
Haze_01822 Corylus avellana HOM05D006764 ORTHO05D008516 1.2e-43 181.0 285 38.9
SMO367G0572 Selaginella moellendorffii HOM05D006764 ORTHO05D008516 7.9e-43 178.3 248 41.1
AUR62014213 Chenopodium quinoa HOM05D006764 ORTHO05D008516 3.9e-42 176.0 248 42.7
Cpa.g.sc30.47 Carica papaya HOM05D006764 ORTHO05D008516 1.8e-39 167.2 106 73.6
AagrBONN_evm.TU.Sc2ySwM_228.3284 Anthoceros agrestis HOM05D006764 ORTHO05D008516 2.6e-38 163.3 220 41.8
Cfa005482 Carpinus fangiana HOM05D006764 ORTHO05D008516 1.7e-37 160.6 126 60.3
SalBow7G3863 Salvia bowleyana HOM05D006764 ORTHO05D008516 7.2e-36 155.2 144 58.3
Hund12938 Selenicereus undatus HOM05D006764 ORTHO05D008516 4.0e-34 149.4 142 54.2
Lj5A261T39 Lonicera japonica HOM05D006764 ORTHO05D008516 6.7e-34 148.7 231 43.3
Sed0008550 Sechium edule HOM05D000755 ORTHO05D000642 3.3e-33 146.4 199 44.7
Cre01.g032350 Chlamydomonas reinhardtii HOM05D006764 ORTHO05D008516 9.1e-31 138.3 275 34.2
CBR_g19125 Chara braunii HOM05D006764 ORTHO05D008516 4.2e-28 129.4 175 40.6
Os04g0433200 Oryza sativa ssp. japonica HOM05D006764 ORTHO05D008516 4.7e-27 125.9 122 50.8
SEGI_28644 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 9.8e-25 118.2 92 60.9
FAN04G0462 Fragaria x ananassa HOM05D006764 ORTHO05D008516 2.2e-24 117.1 67 80.6
Hund29476 Selenicereus undatus HOM05D006764 ORTHO05D008516 3.1e-23 113.2 109 52.3
Hund29477 Selenicereus undatus HOM05D006764 ORTHO05D008516 3.1e-23 113.2 109 52.3
MCO04G067 Micromonas commoda HOM05D006764 ORTHO05D008516 1.4e-18 97.8 257 27.2
Nn6g34108 Nelumbo nucifera HOM05D006764 ORTHO05D008516 5.2e-10 69.3 81 46.9
MBI17_g13541_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 9.8e-09 65.1 51 64.7
Nn3g16387 Nelumbo nucifera HOM05D006764 ORTHO05D008516 6.4e-08 62.4 69 44.9
Nn1g06486 Nelumbo nucifera HOM05D027421 ORTHO05D008516 3.5e-06 56.6 91 37.4
Cc00_g10410 Coffea canephora HOM05D006764 ORTHO05D008516 4.6e-06 56.2 55 58.2


User provided reference genes

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