Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 1.9e-273 945.3 482 100.0
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 7.9e-264 913.3 482 97.5
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 4.0e-260 901.0 482 97.1
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 7.4e-254 880.2 482 94.0
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 7.4e-254 880.2 482 94.0
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 4.5e-251 870.9 482 94.0
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 2.7e-240 835.1 482 90.0
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 3.2e-233 811.6 480 88.3
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 1.4e-228 796.2 471 88.1
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.7e-224 781.9 472 86.7
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.0e-223 780.0 476 86.1
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 1.4e-212 743.0 496 79.2
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 5.0e-210 734.6 474 80.4
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.9e-188 662.9 479 72.9
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 1.7e-178 629.8 476 69.7
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 8.1e-176 620.9 463 69.1
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 2.0e-174 616.3 476 68.9
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 6.4e-173 611.3 463 67.8
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 2.3e-170 602.8 473 67.7
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 3.0e-170 602.4 484 65.3
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 1.9e-169 599.7 472 67.2
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 1.9e-169 599.7 455 68.4
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 2.1e-168 596.3 460 68.7
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 2.8e-168 595.9 463 67.8
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 3.6e-168 595.5 449 69.5
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 6.2e-168 594.7 474 66.5
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 6.2e-168 594.7 461 67.9
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 6.2e-168 594.7 456 67.1
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 5.2e-167 591.7 468 68.4
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 5.2e-167 591.7 460 68.0
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 8.9e-167 590.9 447 69.1
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 8.9e-167 590.9 461 68.3
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 8.9e-167 590.9 463 67.2
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 1.2e-166 590.5 467 67.0
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 4.4e-166 588.6 475 66.5
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 9.9e-166 587.4 460 67.4
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 2.9e-165 585.9 456 66.7
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 3.8e-165 585.5 467 66.0
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 4.9e-165 585.1 467 66.2
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 4.9e-165 585.1 473 66.6
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 6.4e-165 584.7 461 66.6
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 8.4e-165 584.3 459 66.9
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 8.4e-165 584.3 455 67.3
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 1.4e-164 583.6 458 67.0
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 2.7e-163 579.3 471 65.8
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 7.8e-163 577.8 464 67.7
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 1.3e-162 577.0 445 68.5
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 1.7e-162 576.6 455 66.8
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 2.3e-162 576.2 467 64.9
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 3.0e-162 575.9 497 62.6
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 6.6e-162 574.7 462 64.7
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 6.6e-162 574.7 464 67.5
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.1e-161 573.9 467 66.6
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.1e-161 573.9 464 67.5
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.3e-161 572.4 467 66.4
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 7.3e-161 571.2 460 65.0
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 7.3e-161 571.2 465 66.0
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 4.7e-160 568.5 469 63.3
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 8.1e-160 567.8 469 63.5
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 1.8e-159 566.6 453 65.6
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 2.4e-159 566.2 466 65.9
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 5.3e-159 565.1 459 66.4
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.5e-158 563.5 465 65.4
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 2.0e-158 563.1 467 64.0
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 2.0e-158 563.1 468 63.9
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 5.8e-158 561.6 468 63.7
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 1.4e-156 557.0 462 63.4
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 5.1e-154 548.5 463 63.3
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 2.5e-153 546.2 435 67.6
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 2.1e-152 543.1 464 62.5
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 4.8e-152 542.0 452 61.7
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.8e-151 540.0 427 68.1
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 4.9e-149 531.9 556 54.0
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 2.4e-148 529.6 460 62.0
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 1.0e-146 524.2 453 60.9
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 1.3e-144 517.3 443 62.3
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.6e-144 516.9 461 61.0
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 2.8e-144 516.2 445 62.7
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 3.4e-142 509.2 370 71.6
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 2.2e-141 506.5 429 64.8
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 9.3e-140 501.1 316 83.5
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 1.2e-139 500.7 477 55.8
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 1.6e-139 500.4 457 58.9
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 1.5e-137 493.8 456 59.2
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 5.6e-137 491.9 532 54.1
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 6.9e-135 485.0 470 58.3
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 6.5e-133 478.4 467 57.6
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 3.1e-127 459.5 462 55.4
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 7.7e-126 454.9 374 63.4
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.2e-124 449.5 412 61.2
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.1e-122 442.2 372 64.0
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 9.7e-121 438.0 464 54.7
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 1.3e-120 437.6 475 55.8
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 3.7e-120 436.0 506 52.6
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.4e-119 434.1 345 65.8
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 8.5e-117 424.9 320 68.8
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.6e-115 420.6 505 50.1
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 9.7e-113 411.4 359 61.0
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 2.8e-112 409.8 461 52.1
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.1e-111 407.9 469 48.6
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 3.8e-109 399.4 327 63.0
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 5.2e-106 389.0 451 51.0
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 2.2e-104 383.6 468 46.8
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 2.0e-102 377.1 268 70.5
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 3.5e-102 376.3 344 61.3
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 9.7e-97 358.2 442 49.1
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 1.7e-96 357.5 480 44.4
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 1.4e-90 337.8 267 65.5
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 4.0e-90 336.3 472 44.9
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 3.5e-86 323.2 308 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 2.4e-79 300.4 367 46.9
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 5.9e-78 295.8 306 55.2
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 5.8e-65 252.7 757 28.0
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 9.2e-63 245.4 287 51.9
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 2.0e-57 227.6 457 35.2
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.1e-54 217.6 432 36.6
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 4.9e-48 196.4 159 65.4
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 6.9e-42 176.0 100 88.0
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 5.4e-39 166.4 179 55.9
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 3.3e-36 157.1 157 53.5
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 5.6e-36 156.4 117 73.5
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 6.2e-35 152.9 452 28.3
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.1e-26 125.6 179 44.7
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.9e-24 117.5 107 57.9
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 4.9e-24 116.7 68 82.4
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 3.5e-22 110.5 323 30.3
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 8.7e-21 105.9 82 63.4
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 3.3e-12 77.4 225 34.7
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 2.6e-09 67.8 113 41.6
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.1e-06 58.2 65 53.8


User provided reference genes

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