Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 0.0e+00 1686.4 971 100.0
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 0.0e+00 1680.2 971 99.9
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 0.0e+00 1649.8 973 96.8
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 0.0e+00 1531.9 981 89.3
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 0.0e+00 1507.7 991 88.0
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 0.0e+00 1128.6 986 72.1
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 3.2e-224 782.7 994 54.6
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.3e-161 574.7 1135 45.6
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 5.6e-144 516.2 989 42.5
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 1.8e-129 468.0 997 40.9
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 1.1e-128 465.3 993 40.7
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.1e-128 465.3 993 40.7
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 9.7e-104 382.5 1156 35.0
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.4e-102 378.6 1238 34.2
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.4e-94 351.3 1120 35.0
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 8.9e-81 306.2 1058 33.8
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-59 236.1 1048 29.4
A07p05110 Brassica napus HOM05D008497 ORTHO05D003355 1.7e-36 159.1 603 32.8
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 4.2e-30 137.9 999 25.8
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.0e-28 133.3 90 66.7
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.0e-28 133.3 90 66.7
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.8e-28 132.5 163 48.5
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.5e-24 119.4 1211 25.2
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.0e-20 106.7 350 33.1
BcaC04g22710 Brassica carinata HOM05D008497 ORTHO05D027096 3.0e-20 105.1 126 55.6
BolC9t54519H Brassica oleracea HOM05D008497 ORTHO05D027096 3.0e-20 105.1 126 55.6
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.3e-19 101.7 195 35.4
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.3e-19 101.7 99 49.5
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 6.9e-17 94.0 155 40.0
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 9.0e-17 93.6 89 48.3
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 4.5e-16 91.3 103 44.7
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.0e-15 90.1 101 45.5
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.0e-15 90.1 100 45.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.2e-15 89.0 89 50.6
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.2e-15 89.0 120 45.8
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.9e-15 88.6 90 48.9
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.8e-15 88.2 102 46.1
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 3.8e-15 88.2 91 48.4
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 8.4e-15 87.0 102 42.2
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.1e-14 86.7 101 42.6
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.4e-14 86.3 99 46.5
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.9e-14 85.9 96 42.7
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.2e-14 85.1 177 39.5
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 3.2e-14 85.1 100 44.0
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.2e-14 85.1 99 46.5
BcaC06g31928 Brassica carinata HOM05D008497 ORTHO05D003355 4.2e-14 84.7 103 50.5
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 5.5e-14 84.3 334 28.7
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 5.5e-14 84.3 98 42.9
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.1e-13 82.4 99 42.4
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.1e-13 82.4 92 47.8
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.5e-13 81.6 243 32.9
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.5e-13 81.6 219 33.8
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 3.5e-13 81.6 236 31.4
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 3.5e-13 81.6 168 33.9
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 4.6e-13 81.3 134 37.3
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.6e-13 81.3 170 33.5
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 6.1e-13 80.9 94 44.7
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.1e-13 80.9 92 45.7
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.9e-13 80.5 177 32.2
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.8e-12 79.3 148 38.5
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.3e-12 79.0 206 33.5
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 3.0e-12 78.6 89 46.1
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.0e-12 78.6 245 31.4
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 5.1e-12 77.8 89 44.9
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 5.1e-12 77.8 284 28.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 5.1e-12 77.8 219 30.6
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.1e-12 77.8 91 41.8
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 5.1e-12 77.8 94 42.6
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.1e-11 76.6 100 38.0
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.5e-11 76.3 259 30.1
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.9e-11 75.9 235 29.8
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 1.9e-11 75.9 239 31.4
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.9e-11 75.9 90 42.2
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 3.3e-11 75.1 106 38.7
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 4.3e-11 74.7 96 38.5
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 4.3e-11 74.7 88 40.9
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 7.4e-11 73.9 311 27.3
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 9.7e-11 73.6 88 46.6
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.3e-10 73.2 285 27.7
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.3e-10 73.2 307 30.9
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.3e-10 73.2 254 28.7
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 2.8e-10 72.0 149 30.9
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.7e-10 71.6 285 29.1
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 6.3e-10 70.9 298 26.8
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 1.1e-09 70.1 88 50.0
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.4e-09 69.7 88 42.0
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.8e-09 69.3 177 33.3
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.8e-09 69.3 88 44.3
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 2.4e-09 68.9 88 42.0
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 2.4e-09 68.9 223 29.1
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 2.4e-09 68.9 339 26.8
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.4e-09 68.9 105 38.1
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 4.1e-09 68.2 88 39.8
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 4.1e-09 68.2 201 29.9
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.1e-09 68.2 109 37.6
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.1e-09 68.2 89 39.3
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 6.9e-09 67.4 231 30.3
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 6.9e-09 67.4 514 24.1
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 9.0e-09 67.0 94 37.2
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.2e-08 66.6 848 23.0
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 1.2e-08 66.6 219 27.4
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.5e-08 66.2 148 33.1
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.5e-08 66.2 492 24.6
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.5e-08 66.2 321 25.2
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.0e-08 65.9 212 31.1
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.6e-08 65.5 111 35.1
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.6e-08 65.5 77 42.9
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.4e-08 65.1 265 28.3
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.4e-08 65.1 77 44.2
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.4e-08 65.1 77 44.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 4.5e-08 64.7 312 26.3
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 4.5e-08 64.7 283 25.8
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 5.9e-08 64.3 88 37.5
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 5.9e-08 64.3 90 42.2
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 7.7e-08 63.9 88 36.4
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 7.7e-08 63.9 469 22.6
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.3e-07 63.2 101 35.6
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.2e-07 62.4 169 32.0
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 2.9e-07 62.0 311 26.7
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 6.5e-07 60.8 826 23.1
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 8.5e-07 60.5 87 34.5
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 8.5e-07 60.5 93 38.7
C09p16040 Brassica napus HOM05D008497 ORTHO05D027096 1.1e-06 60.1 80 48.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.1e-06 60.1 88 38.6
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.1e-06 60.1 263 28.1
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.1e-06 60.1 99 36.4
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.4e-06 59.7 822 22.4
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 1.9e-06 59.3 161 26.7
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.9e-06 59.3 187 29.4
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.9e-06 59.3 462 22.7
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.5e-06 58.9 93 38.7
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 3.2e-06 58.5 91 37.4
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 3.2e-06 58.5 488 23.6
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 7.2e-06 57.4 135 30.4
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 7.2e-06 57.4 86 37.2
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 9.4e-06 57.0 63 46.0
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 9.4e-06 57.0 93 35.5
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 9.4e-06 57.0 231 28.6
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 9.4e-06 57.0 121 32.2


User provided reference genes

Program Settings