Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 5.6e-194 681.0 410 100.0
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.0e-179 633.6 410 95.1
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 2.2e-174 615.9 410 93.2
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 5.4e-173 611.3 412 92.7
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 8.4e-166 587.4 414 85.5
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 2.7e-164 582.4 411 89.3
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 4.6e-164 581.6 412 90.3
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 3.0e-163 578.9 414 85.0
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 6.7e-163 577.8 411 85.4
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 7.4e-162 574.3 414 88.6
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.6e-161 573.2 411 84.7
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.5e-159 566.6 411 85.2
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 1.4e-157 560.1 415 81.4
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 4.2e-157 558.5 414 80.4
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 5.1e-155 551.6 411 79.3
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.1e-154 550.4 419 79.0
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 2.9e-150 535.8 413 77.5
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 7.1e-149 531.2 411 78.3
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 4.8e-129 465.3 415 68.7
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 4.8e-113 412.1 277 95.7
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 7.7e-103 378.3 412 54.9
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 5.0e-102 375.6 419 54.7
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 1.5e-101 374.0 428 53.0
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 2.5e-101 373.2 412 53.2
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 7.2e-101 371.7 409 55.3
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.2e-100 370.9 409 55.3
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.6e-100 370.5 409 54.0
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 2.8e-100 369.8 425 51.8
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.8e-100 369.8 409 54.8
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 2.8e-100 369.8 421 56.3
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.0e-99 367.9 411 53.5
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.4e-99 367.5 412 52.9
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 3.0e-99 366.3 417 51.6
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.0e-98 363.6 414 52.4
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.4e-98 362.5 410 53.2
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 2.4e-96 356.7 414 52.9
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 2.4e-96 356.7 426 50.9
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 3.2e-96 356.3 413 50.8
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 5.4e-96 355.5 409 52.8
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 7.0e-96 355.1 424 52.6
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 7.0e-96 355.1 416 51.2
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 9.2e-96 354.8 411 52.1
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 2.0e-95 353.6 417 52.3
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 2.0e-95 353.6 421 50.8
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 7.8e-95 351.7 424 51.2
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 1.3e-94 350.9 412 51.2
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 1.3e-94 350.9 412 53.2
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 1.7e-94 350.5 412 51.5
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.7e-94 350.5 415 51.3
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 1.7e-94 350.5 413 51.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.3e-94 350.1 421 50.8
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 5.0e-94 349.0 408 52.2
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 8.6e-94 348.2 414 51.9
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 7.3e-93 345.1 451 47.7
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 1.6e-92 344.0 410 51.2
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 6.2e-92 342.0 417 48.7
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 6.2e-92 342.0 417 50.6
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.4e-91 340.9 421 49.9
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.4e-91 340.9 422 48.6
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.8e-91 340.5 417 50.4
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 1.8e-91 340.5 411 51.1
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 3.1e-91 339.7 412 50.5
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 3.1e-91 339.7 416 49.5
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 5.2e-91 339.0 410 54.6
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 5.2e-91 339.0 414 50.5
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.2e-90 337.8 422 55.7
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 5.8e-90 335.5 412 50.2
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 9.8e-90 334.7 416 50.0
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.3e-89 334.3 417 48.7
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.3e-89 334.3 416 50.0
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.3e-89 334.3 424 48.8
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 1.3e-89 334.3 411 50.6
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 2.2e-89 333.6 418 52.9
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 3.7e-89 332.8 422 50.7
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.1e-88 331.3 415 49.9
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 1.4e-88 330.9 411 49.4
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 1.9e-88 330.5 411 50.9
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 2.4e-88 330.1 413 49.4
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 4.1e-88 329.3 418 50.0
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 4.1e-88 329.3 424 48.3
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 9.2e-88 328.2 419 48.2
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 9.2e-88 328.2 418 49.0
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 9.2e-88 328.2 416 50.0
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.7e-87 326.6 420 49.0
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.7e-86 323.9 416 48.8
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.3e-86 323.6 418 48.6
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 3.0e-86 323.2 421 47.7
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 3.3e-85 319.7 420 48.3
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 3.3e-85 319.7 431 48.0
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.6e-84 317.4 420 49.0
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 8.1e-84 315.1 435 47.4
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 3.1e-83 313.2 411 48.2
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 5.2e-83 312.4 439 46.2
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.2e-82 311.2 418 47.8
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 4.4e-82 309.3 405 48.9
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 7.5e-82 308.5 421 46.8
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.3e-81 307.8 413 47.5
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.9e-81 306.6 410 48.3
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 2.9e-81 306.6 413 49.4
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.9e-81 306.6 415 52.3
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 3.7e-81 306.2 415 51.6
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 9.2e-80 301.6 418 50.2
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 3.5e-79 299.7 394 45.4
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 3.6e-76 289.7 274 57.7
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 6.2e-76 288.9 399 54.1
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 2.0e-74 283.9 411 45.3
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 1.1e-72 278.1 444 41.2
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.5e-71 273.1 424 43.4
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 3.5e-71 273.1 283 55.8
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.3e-69 266.2 415 45.5
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 4.3e-69 266.2 416 42.5
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.9e-65 253.4 412 42.5
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 1.4e-59 234.6 275 49.8
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 4.4e-58 229.6 212 75.0
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 4.9e-49 199.5 433 36.7
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 5.3e-43 179.5 399 34.8
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.7e-41 174.5 493 36.3
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 1.6e-39 167.9 241 43.6
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 1.6e-39 167.9 241 43.6
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 1.6e-39 167.9 241 43.6
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 3.5e-39 166.8 294 38.8
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.4e-35 154.8 148 59.5
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 5.3e-35 152.9 554 29.2
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 1.2e-34 151.8 148 56.1
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.5e-34 151.4 423 31.2
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 5.7e-29 132.9 148 53.4
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 2.2e-28 131.0 207 42.0
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.1e-27 128.6 308 33.1
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.0e-25 122.1 411 31.1
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 1.3e-17 95.1 374 28.1
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.3e-17 95.1 374 28.1
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.6e-13 80.9 108 49.1
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.3e-13 80.5 94 48.9
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 5.9e-10 69.7 38 81.6
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 8.8e-06 55.8 78 42.3


User provided reference genes

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