Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 1.5e-308 1062.0 519 100.0
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.2e-305 1052.4 519 99.4
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.2e-305 1052.4 519 99.4
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 6.4e-304 1046.6 522 98.3
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 2.3e-293 1011.5 522 94.3
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 3.9e-293 1010.7 522 93.9
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.1e-292 1009.2 522 93.7
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.1e-292 1009.2 522 93.7
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.9e-292 1008.4 522 93.5
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 3.3e-292 1007.7 519 93.8
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 3.3e-292 1007.7 519 93.8
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 9.6e-292 1006.1 522 93.1
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.3e-291 1005.7 519 93.6
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.6e-291 1005.4 519 93.1
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 4.8e-291 1003.8 517 93.2
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 1.5e-289 998.8 519 92.9
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 2.0e-289 998.4 519 92.9
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 4.9e-288 993.8 522 92.7
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.4e-287 992.3 522 92.3
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 1.9e-284 981.9 522 90.2
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 3.3e-284 981.1 522 91.6
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.2e-281 972.6 519 89.6
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.0e-273 945.3 522 86.8
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 4.8e-267 924.1 519 83.6
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 3.0e-261 904.8 519 82.5
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 2.5e-255 885.2 519 81.1
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 4.2e-255 884.4 522 80.5
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 5.5e-255 884.0 522 81.4
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 7.2e-255 883.6 517 81.6
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.6e-254 882.5 519 80.7
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 3.0e-253 878.2 520 79.6
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 3.0e-253 878.2 514 80.9
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 1.5e-252 875.9 519 80.2
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 2.6e-252 875.2 520 79.6
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 7.4e-252 873.6 517 80.1
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.7e-252 873.2 525 79.2
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.3e-251 872.8 525 79.4
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.2e-251 872.1 519 79.2
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.8e-251 871.7 519 79.6
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.7e-251 871.3 525 79.2
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.8e-251 870.9 525 79.2
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.2e-251 870.2 517 79.9
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.4e-250 869.4 520 79.4
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.2e-249 866.3 514 80.5
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 1.2e-249 866.3 520 79.0
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.5e-249 865.9 519 79.4
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.5e-249 865.9 519 79.2
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.0e-249 865.5 519 79.6
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 4.5e-249 864.4 519 80.0
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 7.7e-249 863.6 520 78.5
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 2.9e-248 861.7 519 78.0
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 5.0e-248 860.9 516 79.8
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 1.1e-247 859.8 517 78.7
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 1.5e-247 859.4 520 77.9
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 1.9e-247 859.0 543 75.9
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 2.5e-247 858.6 520 79.0
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.2e-247 857.8 517 79.3
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 5.5e-247 857.4 518 78.8
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.2e-246 856.3 519 78.8
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.4e-245 852.8 519 78.0
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.4e-245 852.8 519 78.0
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 4.0e-245 851.3 544 75.6
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.0e-244 849.0 512 79.3
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 4.4e-244 847.8 517 78.5
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.4e-242 842.0 529 76.4
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 3.1e-242 841.6 520 77.3
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 4.1e-242 841.3 520 76.9
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 5.3e-242 840.9 517 77.2
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 7.0e-242 840.5 519 76.3
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 9.1e-242 840.1 519 77.3
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 4.5e-241 837.8 522 76.2
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 5.9e-241 837.4 519 77.1
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 1.3e-240 836.3 519 77.6
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.7e-240 835.9 517 77.0
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.2e-240 835.5 515 76.9
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.0e-240 834.3 551 74.8
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 3.2e-239 831.6 516 77.7
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 4.2e-239 831.2 520 75.2
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 7.2e-239 830.5 517 76.2
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.2e-238 829.7 517 76.4
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.6e-238 829.3 519 75.5
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 3.6e-238 828.2 520 75.2
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.4e-237 826.2 517 74.9
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 1.4e-237 826.2 519 76.3
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 1.8e-237 825.9 522 75.9
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.8e-237 825.9 519 76.3
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 4.0e-237 824.7 518 75.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 6.8e-237 823.9 519 75.5
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 1.5e-236 822.8 519 75.5
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 4.4e-236 821.2 517 76.8
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.3e-235 819.7 519 75.9
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.3e-235 817.0 517 75.8
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 8.3e-235 817.0 494 77.9
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 1.8e-234 815.8 512 75.6
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.8e-234 815.8 514 76.5
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 7.0e-234 813.9 517 75.0
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 9.1e-234 813.5 518 73.6
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 5.9e-233 810.8 468 82.3
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 1.3e-232 809.7 517 75.0
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 2.5e-231 805.4 521 74.3
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 4.2e-231 804.7 519 74.0
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 9.4e-231 803.5 522 75.7
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 2.1e-230 802.4 519 74.4
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 6.1e-230 800.8 519 74.2
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 4.0e-229 798.1 518 72.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 6.8e-229 797.3 520 72.5
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 6.8e-229 797.3 466 81.3
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 1.2e-228 796.6 517 74.5
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 9.8e-228 793.5 518 72.2
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 3.1e-226 788.5 468 81.0
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.7e-225 785.4 517 74.3
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 2.7e-225 785.4 529 72.0
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.5e-225 784.6 518 71.6
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 1.7e-224 782.7 476 77.1
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.9e-224 781.9 492 75.6
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 2.9e-224 781.9 469 78.5
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.9e-224 781.9 471 78.8
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 2.5e-223 778.9 512 73.6
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 3.3e-223 778.5 512 73.6
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 4.2e-223 778.1 519 72.4
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 2.0e-220 769.2 550 69.5
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.6e-220 768.8 517 72.7
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 3.4e-220 768.5 515 71.3
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 9.8e-220 766.9 465 78.7
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 4.9e-219 764.6 548 69.0
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 6.4e-219 764.2 467 77.3
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 9.2e-218 760.4 518 71.4
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 5.9e-217 757.7 560 69.1
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 8.6e-216 753.8 517 70.4
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 6.2e-214 747.7 519 69.9
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 6.2e-214 747.7 570 65.8
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 5.2e-213 744.6 512 70.3
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 6.8e-213 744.2 519 69.6
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 7.5e-212 740.7 512 69.9
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.4e-210 736.5 519 69.6
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 5.4e-210 734.6 519 69.4
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 3.3e-207 725.3 516 69.4
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 5.2e-205 718.0 542 65.5
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 5.8e-196 688.0 518 65.4
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 2.1e-193 679.5 519 64.5
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.5e-191 673.3 498 70.1
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.2e-188 663.7 379 82.1
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 7.3e-183 644.4 377 80.6
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 4.8e-182 641.7 384 79.2
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 6.4e-179 631.3 481 64.4
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 3.5e-177 625.5 560 57.7
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 7.9e-177 624.4 482 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 1.4e-170 603.6 484 59.9
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 7.1e-170 601.3 293 98.6
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.1e-165 587.4 448 61.6
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 3.3e-151 539.3 514 54.1
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 1.6e-150 537.0 471 55.4
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 3.7e-142 509.2 354 70.9
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.0e-128 464.5 288 76.4
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.1e-125 454.5 293 73.7
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 7.7e-124 448.4 290 75.2
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.9e-122 443.7 267 76.8
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 5.5e-122 442.2 289 74.7
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 8.9e-104 381.7 245 73.1
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 3.9e-99 366.3 245 73.1
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.9e-78 297.0 200 70.5
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 5.3e-56 223.0 134 76.9
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 3.4e-55 220.3 467 31.5
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 4.2e-53 213.4 470 30.9
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 5.0e-38 163.3 141 53.9
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.5e-37 159.8 205 46.3
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 1.3e-33 148.7 109 65.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.8e-27 128.3 86 70.9
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 1.6e-20 105.1 58 79.3
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.6e-20 104.0 144 47.2
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 1.5e-18 98.6 60 73.3
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 2.6e-18 97.8 156 35.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.7e-11 73.2 160 36.2
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.8e-06 57.4 37 70.3
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 5.0e-06 57.0 47 57.4


User provided reference genes

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