Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 7.0e-295 1016.5 509 100.0
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 7.0e-295 1016.5 509 100.0
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 6.5e-285 983.4 510 97.6
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 3.2e-284 981.1 510 97.5
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 3.2e-284 981.1 510 97.5
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.8e-271 938.7 511 93.2
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 1.7e-269 932.2 523 90.8
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 2.9e-264 914.8 523 89.3
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 7.3e-260 900.2 510 88.4
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 7.3e-260 900.2 510 88.4
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 3.6e-259 897.9 513 88.1
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 3.6e-259 897.9 513 88.1
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 5.8e-257 890.6 518 87.5
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 3.2e-255 884.8 522 86.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 2.0e-254 882.1 523 85.5
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 6.0e-254 880.6 519 86.3
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 2.8e-251 871.7 522 85.1
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.3e-248 862.8 509 84.5
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.3e-229 798.9 520 78.7
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 2.4e-223 778.9 536 77.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 2.2e-200 702.6 505 71.9
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.1e-199 700.3 481 73.2
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 7.2e-199 697.6 489 71.8
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 9.3e-199 697.2 425 78.4
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 3.9e-197 691.8 489 70.3
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 4.3e-196 688.3 529 67.9
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 7.4e-196 687.6 513 68.0
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 9.7e-196 687.2 468 73.1
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 2.8e-195 685.6 517 67.5
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.1e-194 683.7 488 69.7
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.4e-194 683.3 534 67.4
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.8e-194 682.9 516 68.4
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 4.1e-194 681.8 488 70.7
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 5.3e-194 681.4 503 69.4
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 9.1e-194 680.6 488 70.3
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.2e-193 680.2 498 69.3
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 2.0e-193 679.5 508 68.3
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 3.4e-193 678.7 527 67.4
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.4e-193 678.7 525 66.7
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 4.5e-193 678.3 464 73.1
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 7.7e-193 677.6 495 69.1
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.3e-192 676.8 503 69.2
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 2.2e-192 676.0 500 69.8
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.9e-192 675.6 520 67.5
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 3.8e-192 675.2 499 68.1
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 3.8e-192 675.2 493 70.2
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 5.0e-192 674.9 534 66.5
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 8.5e-192 674.1 506 68.0
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 8.5e-192 674.1 488 70.5
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 1.1e-191 673.7 422 76.8
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 3.2e-191 672.2 521 66.0
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 2.1e-190 669.5 487 70.2
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.7e-190 669.1 497 70.0
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 6.1e-190 667.9 477 71.3
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 6.1e-190 667.9 533 65.5
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 7.9e-190 667.5 502 67.9
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.0e-189 667.2 478 70.9
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.8e-189 666.4 456 72.6
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 3.0e-189 665.6 504 68.7
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.0e-189 665.6 502 67.5
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 3.0e-189 665.6 502 67.5
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 5.1e-189 664.8 493 69.6
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 8.8e-189 664.1 515 67.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.1e-188 663.7 424 76.7
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 7.4e-188 661.0 429 75.5
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.7e-187 659.8 493 69.2
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 6.3e-187 657.9 441 73.5
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 8.2e-187 657.5 425 75.1
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 3.1e-186 655.6 531 65.2
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 4.1e-186 655.2 467 69.2
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 7.0e-186 654.4 537 64.1
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 2.9e-184 649.0 528 64.8
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 6.5e-184 647.9 501 66.7
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 8.5e-184 647.5 476 67.2
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.9e-183 646.4 453 72.8
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-183 646.4 438 73.7
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.2e-183 644.4 515 67.0
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 1.6e-182 643.3 463 69.8
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.7e-182 642.5 515 66.8
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.6e-182 642.1 498 65.9
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.6e-182 642.1 466 69.3
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 4.7e-182 641.7 460 71.1
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 6.1e-182 641.3 499 66.3
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.0e-181 639.0 430 71.6
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.0e-181 639.0 489 67.3
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.9e-181 638.6 440 71.6
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 3.9e-181 638.6 499 65.9
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 5.2e-181 638.3 422 74.2
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 6.7e-181 637.9 489 65.4
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.4e-180 634.4 514 65.0
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.2e-179 632.9 567 61.7
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 4.8e-179 631.7 502 64.5
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.0e-178 627.9 525 64.4
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 1.2e-177 627.1 489 65.8
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.0e-177 626.3 515 65.6
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.5e-177 625.5 418 71.8
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 4.5e-177 625.2 522 62.5
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.2e-176 622.9 463 68.0
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.1e-175 620.5 419 70.9
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 9.4e-175 617.5 422 70.4
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.1e-174 614.8 472 67.4
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.4e-173 613.6 391 76.0
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 3.3e-172 609.0 508 63.0
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 5.9e-169 598.2 639 53.5
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 6.5e-168 594.7 502 64.3
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.1e-167 594.0 419 66.8
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.1e-166 589.7 537 61.1
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.7e-166 589.3 423 70.2
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 4.1e-162 575.5 520 60.0
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 3.5e-161 572.4 503 60.8
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 7.7e-161 571.2 452 66.2
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.2e-158 563.9 370 73.0
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.2e-158 563.9 419 66.3
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.1e-158 563.1 431 62.9
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 2.1e-158 563.1 436 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.4e-157 560.5 454 62.6
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.0e-157 558.9 428 62.9
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.1e-154 550.8 537 58.5
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.6e-153 547.0 412 67.2
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 3.5e-153 545.8 552 58.0
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 4.5e-153 545.4 630 52.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.3e-152 543.9 524 57.1
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.9e-152 542.7 526 58.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 5.0e-152 542.0 499 60.7
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.9e-151 540.0 360 73.3
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 8.0e-150 534.6 446 63.0
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 3.4e-148 529.3 526 57.4
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.4e-148 529.3 444 63.1
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 4.4e-148 528.9 477 58.1
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.2e-147 526.6 517 56.3
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 3.3e-143 512.7 362 71.8
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.4e-140 502.7 426 63.6
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 3.4e-140 502.7 364 67.3
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 8.3e-139 498.0 364 68.1
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.7e-136 490.3 317 74.4
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.0e-136 489.6 421 58.7
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.9e-135 486.9 375 67.2
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 4.3e-135 485.7 314 76.8
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 3.6e-134 482.6 440 61.4
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.4e-130 470.7 430 59.8
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.5e-129 466.1 355 66.8
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.0e-128 463.0 418 60.0
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 5.6e-127 458.8 511 52.8
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.3e-123 447.6 343 63.8
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 8.7e-120 434.9 490 53.3
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 4.0e-117 426.0 375 61.3
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 5.6e-111 405.6 289 69.6
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 7.3e-111 405.2 276 72.5
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.3e-94 351.3 211 78.7
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 6.9e-93 345.5 434 45.4
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.6e-73 280.0 290 56.9
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.4e-71 272.3 278 55.4
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 5.9e-68 262.7 231 63.2
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.1e-65 254.2 145 81.4
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.3e-62 245.0 193 60.6
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 3.7e-62 243.4 328 49.7
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 3.5e-60 236.9 155 74.8
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.2e-59 234.2 385 35.3
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.6e-57 228.0 166 61.4
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.1e-57 227.6 144 76.4
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.1e-53 215.3 193 63.7
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.7e-49 200.7 492 31.9
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.0e-40 170.2 103 79.6
BolC9t59358H Brassica oleracea HOM05D043452 ORTHO05D042342 2.3e-24 117.9 94 78.7
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 5.1e-19 100.1 49 89.8
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 8.6e-19 99.4 227 31.7
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 7.3e-18 96.3 179 33.5
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 2.6e-15 87.8 126 46.8
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 4.4e-15 87.0 51 78.4
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 2.9e-14 84.3 51 78.4
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 2.8e-09 67.8 54 59.3
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 3.6e-09 67.4 106 40.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.8e-08 65.1 36 77.8
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 7.6e-07 59.7 52 55.8
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.3e-06 58.9 63 46.0


User provided reference genes

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