Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 6.5e-29 130.2 72 100.0
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 7.1e-28 126.7 72 97.2
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 7.1e-28 126.7 72 97.2
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 7.1e-28 126.7 72 97.2
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 7.1e-28 126.7 72 97.2
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 2.7e-27 124.8 72 95.8
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.5e-25 119.0 72 90.3
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 2.5e-25 118.2 72 93.1
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.5e-25 118.2 72 93.1
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 1.6e-24 115.5 72 91.7
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.8e-24 114.8 72 90.3
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.8e-24 114.8 72 90.3
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.9e-21 104.8 72 80.6
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 7.1e-20 100.1 66 87.9
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.1e-19 98.6 69 81.2
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 3.7e-16 87.8 61 80.3
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 9.0e-15 83.2 62 74.2
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.2e-14 82.8 62 74.2
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 1.2e-14 82.8 65 73.8
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.5e-14 82.4 62 74.2
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 2.0e-14 82.0 63 74.6
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 3.4e-14 81.3 59 78.0
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 3.4e-14 81.3 63 74.6
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 3.4e-14 81.3 59 76.3
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 4.5e-14 80.9 57 78.9
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 5.9e-14 80.5 63 74.6
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 5.9e-14 80.5 63 74.6
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 5.9e-14 80.5 59 74.6
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 5.9e-14 80.5 63 73.0
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 5.9e-14 80.5 65 72.3
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 5.9e-14 80.5 57 78.9
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 5.9e-14 80.5 63 73.0
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 5.9e-14 80.5 57 78.9
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.3e-13 79.3 59 74.6
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.3e-13 79.3 58 74.1
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.3e-13 79.3 57 77.2
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.7e-13 79.0 63 73.0
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 2.2e-13 78.6 59 76.3
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 2.2e-13 78.6 58 74.1
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.2e-13 78.6 58 74.1
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 2.2e-13 78.6 57 78.9
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 2.9e-13 78.2 59 74.6
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.9e-13 78.2 57 77.2
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 2.9e-13 78.2 74 64.9
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 3.8e-13 77.8 57 77.2
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 3.8e-13 77.8 55 80.0
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 3.8e-13 77.8 59 74.6
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 5.0e-13 77.4 61 72.1
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 5.0e-13 77.4 65 69.2
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 5.0e-13 77.4 65 69.2
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 6.5e-13 77.0 57 77.2
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.5e-13 77.0 63 73.0
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.5e-13 77.0 63 73.0
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 8.5e-13 76.6 59 72.9
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 8.5e-13 76.6 72 66.7
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 8.5e-13 76.6 57 75.4
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 8.5e-13 76.6 57 75.4
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 8.5e-13 76.6 73 63.0
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-12 76.3 57 73.7
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-12 76.3 57 73.7
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 1.1e-12 76.3 57 73.7
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 1.1e-12 76.3 57 73.7
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.1e-12 76.3 57 73.7
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 1.1e-12 76.3 68 67.6
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.4e-12 75.9 69 63.8
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.4e-12 75.9 58 74.1
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 1.4e-12 75.9 59 74.6
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 1.4e-12 75.9 69 66.7
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.9e-12 75.5 59 74.6
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 1.9e-12 75.5 64 67.2
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 1.9e-12 75.5 59 74.6
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.5e-12 75.1 57 73.7
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 2.5e-12 75.1 57 73.7
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 2.5e-12 75.1 60 71.7
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 3.2e-12 74.7 57 71.9
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 3.2e-12 74.7 57 73.7
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 3.2e-12 74.7 58 74.1
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 4.2e-12 74.3 57 75.4
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 4.2e-12 74.3 59 72.9
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 4.2e-12 74.3 59 72.9
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 4.2e-12 74.3 57 75.4
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 5.5e-12 73.9 57 73.7
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 5.5e-12 73.9 57 75.4
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 7.2e-12 73.6 68 66.2
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 7.2e-12 73.6 58 72.4
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 7.2e-12 73.6 57 71.9
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 9.4e-12 73.2 57 73.7
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 9.4e-12 73.2 68 66.2
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.2e-11 72.8 62 67.7
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 1.2e-11 72.8 57 73.7
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.2e-11 72.8 70 64.3
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.2e-11 72.8 57 73.7
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 1.6e-11 72.4 57 73.7
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.6e-11 72.4 59 71.2
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.6e-11 72.4 57 70.2
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 2.1e-11 72.0 57 73.7
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.1e-11 72.0 59 69.5
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 2.1e-11 72.0 57 73.7
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 2.7e-11 71.6 59 67.8
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 2.7e-11 71.6 57 71.9
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.1e-11 70.5 66 65.2
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 6.1e-11 70.5 57 70.2
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 7.9e-11 70.1 59 72.9
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 7.9e-11 70.1 59 72.9
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 1.4e-10 69.3 61 68.9
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.8e-10 68.9 57 68.4
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.3e-10 68.6 59 71.2
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.3e-10 68.6 59 71.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 2.3e-10 68.6 74 62.2
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 6.7e-10 67.0 57 66.7
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.1e-09 66.2 58 63.8
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.5e-09 65.9 59 66.1
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 4.3e-09 64.3 57 64.9
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 5.7e-09 63.9 57 63.2
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.7e-08 62.4 48 77.1
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.2e-08 62.0 44 79.5
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.8e-08 60.8 101 43.6
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 6.3e-08 60.5 44 77.3
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.4e-07 59.3 43 76.7
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 5.3e-07 57.4 42 78.6
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 6.9e-07 57.0 50 68.0
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 1.2e-06 56.2 42 76.2
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.5e-06 55.8 45 71.1
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 2.0e-06 55.5 42 73.8
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.4e-06 54.7 42 76.2
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 5.9e-06 53.9 70 54.3
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 7.7e-06 53.5 42 73.8


User provided reference genes

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