Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 2.0e-209 732.3 395 100.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 8.6e-192 673.7 395 93.7
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 4.9e-179 631.3 420 85.7
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 5.1e-176 621.3 395 87.3
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 5.1e-176 621.3 395 87.3
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.3e-171 606.7 395 85.6
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 4.9e-171 604.7 406 83.3
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 4.9e-171 604.7 406 84.0
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 5.4e-170 601.3 395 84.8
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.5e-167 593.2 395 84.1
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 1.4e-162 576.6 406 80.8
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 6.4e-147 524.6 359 80.8
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 7.1e-146 521.2 376 76.9
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 8.7e-144 514.2 361 79.8
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.1e-143 513.8 350 81.1
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 5.6e-143 511.5 350 80.6
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 2.1e-142 509.6 350 79.7
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.1e-141 507.3 348 79.3
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.1e-141 507.3 350 79.4
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 6.9e-141 504.6 350 79.4
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 3.4e-140 502.3 344 79.9
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 2.2e-139 499.6 342 79.2
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 1.1e-138 497.3 344 79.1
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.4e-138 496.9 344 77.9
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.5e-138 496.1 349 76.8
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 2.5e-138 496.1 359 76.0
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.2e-137 493.8 352 76.7
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 2.1e-137 493.0 346 77.2
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 1.0e-136 490.7 344 77.9
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 1.3e-136 490.3 344 77.0
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 3.0e-136 489.2 348 77.6
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 6.7e-136 488.0 346 76.3
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 8.7e-136 487.6 346 76.0
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 8.7e-136 487.6 344 76.5
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 1.5e-135 486.9 346 76.0
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 1.5e-135 486.9 345 75.9
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 2.5e-135 486.1 345 76.2
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.3e-134 483.8 349 74.8
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.6e-134 483.4 349 75.1
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 2.2e-134 483.0 342 75.4
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 2.8e-134 482.6 345 75.4
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 2.8e-134 482.6 347 75.8
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 3.7e-134 482.3 346 75.4
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 4.8e-134 481.9 344 76.2
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 6.3e-134 481.5 350 74.3
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 6.3e-134 481.5 352 73.6
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.3e-134 481.5 345 76.5
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 8.2e-134 481.1 360 74.4
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 1.8e-133 479.9 346 74.0
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 1.8e-133 479.9 346 76.0
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 3.1e-133 479.2 354 74.9
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.1e-133 479.2 364 71.7
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 3.1e-133 479.2 331 78.9
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.1e-133 478.8 426 65.3
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 5.3e-133 478.4 348 74.4
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 5.3e-133 478.4 372 72.3
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 6.9e-133 478.0 343 75.2
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 9.0e-133 477.6 344 74.7
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 9.0e-133 477.6 354 74.3
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 2.0e-132 476.5 344 74.4
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 2.0e-132 476.5 344 74.4
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.6e-132 476.1 344 73.8
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 3.4e-132 475.7 344 74.4
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 2.2e-131 473.0 344 75.6
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 8.5e-131 471.1 350 74.3
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.4e-130 470.3 352 71.6
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.5e-130 469.5 350 74.0
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 4.2e-130 468.8 346 74.0
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 4.2e-130 468.8 343 74.6
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 5.5e-130 468.4 342 74.9
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 5.5e-130 468.4 332 75.9
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 9.4e-130 467.6 285 91.2
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.1e-129 466.5 342 72.5
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 6.1e-129 464.9 350 74.3
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.0e-128 464.2 346 73.4
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 2.3e-128 463.0 346 73.4
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 3.0e-128 462.6 361 72.0
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 5.1e-128 461.8 346 72.5
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 8.8e-128 461.1 344 73.5
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.3e-127 459.1 388 67.0
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 5.7e-127 458.4 346 73.4
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 9.7e-127 457.6 346 72.8
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 4.8e-126 455.3 342 72.8
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 1.1e-125 454.1 344 73.5
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.5e-124 450.3 346 72.0
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.5e-124 450.3 344 73.0
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.5e-124 450.3 344 73.0
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 3.4e-124 449.1 344 72.1
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 5.9e-124 448.4 351 70.7
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.7e-123 446.8 337 73.0
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 5.0e-123 445.3 329 74.2
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 8.5e-123 444.5 366 69.9
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.1e-122 444.1 344 71.5
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 1.4e-122 443.7 358 68.7
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.5e-122 443.0 344 69.8
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 4.2e-122 442.2 343 69.1
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 7.2e-122 441.4 346 70.8
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 2.1e-121 439.9 342 70.8
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 4.7e-121 438.7 331 72.2
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.4e-119 432.2 346 69.4
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 3.7e-118 429.1 338 69.2
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 8.2e-118 427.9 345 69.9
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.8e-117 426.8 351 67.2
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 3.1e-117 426.0 361 67.6
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.2e-116 424.1 344 68.3
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 4.5e-116 422.2 343 69.4
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.9e-115 419.5 327 71.6
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.0e-115 418.7 344 69.2
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.9e-114 416.8 335 70.1
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 3.2e-114 416.0 329 70.5
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.2e-113 414.1 347 66.9
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.4e-112 410.6 302 72.5
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 3.0e-112 409.5 298 76.5
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.2e-112 408.7 343 65.0
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 6.7e-112 408.3 350 66.0
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 6.7e-112 408.3 350 66.6
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.7e-110 403.7 378 61.9
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.2e-108 397.5 347 66.9
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.2e-106 389.0 340 63.2
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.0e-104 384.4 344 62.5
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 4.4e-103 379.0 335 63.3
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.2e-102 376.7 288 69.8
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 4.5e-100 369.0 268 74.6
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 5.9e-100 368.6 282 73.0
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 2.9e-99 366.3 333 60.1
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 5.0e-99 365.5 346 61.6
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 1.1e-98 364.4 344 59.9
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.3e-96 356.7 313 64.2
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.8e-94 349.7 247 76.1
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 3.7e-94 349.4 292 69.2
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.5e-92 342.8 359 55.7
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 3.3e-90 336.3 333 58.6
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.2e-90 335.1 271 69.7
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 6.8e-88 328.6 346 53.8
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.1e-81 307.0 267 66.7
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 5.2e-80 302.4 218 78.4
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 4.9e-78 295.8 264 61.7
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.3e-74 282.7 224 72.3
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-63 248.1 174 77.0
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 7.1e-45 185.7 124 81.5
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 9.3e-37 158.7 121 66.1
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.1e-33 147.5 118 66.9
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 2.0e-31 141.0 132 64.4
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.6e-31 140.6 133 60.9
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 3.5e-28 130.2 80 75.0
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.0e-27 128.6 71 81.7
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 3.9e-27 126.7 72 97.2
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 1.5e-26 124.8 71 80.3
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.2e-25 119.0 101 57.4
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 4.0e-24 116.7 101 64.4
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.4e-21 108.2 81 75.3
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 4.2e-21 106.7 94 60.6
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 8.2e-17 92.4 82 62.2
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.8e-14 83.6 130 45.4
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 5.5e-13 79.7 80 56.2
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 5.5e-13 79.7 58 77.6
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.4e-11 75.1 98 51.0
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.1e-10 72.0 66 66.7
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 3.3e-10 70.5 235 31.9
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 4.3e-10 70.1 42 78.6
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 4.3e-10 70.1 251 25.9
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 1.4e-08 65.1 107 38.3
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 1.5e-07 61.6 174 28.7
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 2.0e-07 61.2 182 31.3


User provided reference genes

Program Settings