Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.2e-227 792.7 388 100.0
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-194 683.3 376 91.5
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 4.0e-194 681.4 381 89.5
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 6.9e-194 680.6 335 99.1
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-192 676.4 335 98.2
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 4.6e-190 667.9 335 97.6
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 8.5e-184 647.1 334 93.1
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 4.6e-182 641.3 335 91.9
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 3.7e-179 631.7 336 91.1
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 3.1e-178 628.6 336 90.5
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 9.1e-178 627.1 338 89.3
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.7e-176 622.9 336 89.9
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.7e-174 614.8 335 89.3
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.7e-174 614.8 335 89.3
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 7.9e-174 614.0 335 89.6
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.0e-173 613.6 335 89.6
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.3e-172 608.6 334 90.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 8.5e-168 594.0 335 87.8
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 4.0e-157 558.5 335 83.0
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.4e-154 550.1 314 86.9
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.7e-153 545.8 335 80.6
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 7.7e-153 544.3 343 79.3
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.4e-149 533.5 347 78.1
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 7.0e-138 494.6 336 72.6
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.7e-136 490.0 337 73.0
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 7.3e-135 484.6 344 70.3
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 8.0e-134 481.1 343 69.1
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 8.9e-133 477.6 336 70.5
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.5e-132 476.9 339 69.9
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.5e-132 476.9 336 70.5
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.6e-132 476.1 334 71.3
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 3.4e-132 475.7 343 70.3
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 4.4e-132 475.3 350 70.0
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 2.9e-131 472.6 349 69.9
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.7e-131 472.2 349 68.5
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 4.9e-131 471.9 349 69.9
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.1e-130 470.7 346 67.9
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.1e-130 470.7 334 70.7
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.4e-130 470.3 334 70.4
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.4e-130 470.3 336 70.5
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.4e-130 469.5 336 70.2
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.4e-130 469.5 336 70.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 3.2e-130 469.2 335 71.0
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 7.0e-130 468.0 337 70.0
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.0e-129 466.5 346 67.9
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 3.5e-129 465.7 352 68.2
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 4.6e-129 465.3 341 68.3
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.0e-129 464.9 341 68.3
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 7.8e-129 464.5 328 71.0
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.0e-128 464.2 347 69.2
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 2.3e-128 463.0 337 69.7
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 2.3e-128 463.0 346 67.6
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.0e-128 462.6 346 67.6
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.6e-128 461.5 344 67.7
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.5e-127 460.3 345 67.2
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.5e-127 460.3 345 67.2
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.5e-127 460.3 342 67.5
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.5e-127 459.5 346 67.3
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 3.3e-127 459.1 329 69.9
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-126 457.2 341 67.2
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 3.6e-126 455.7 337 67.7
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 8.0e-126 454.5 346 67.1
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 8.0e-126 454.5 347 65.4
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 1.8e-125 453.4 345 66.7
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.2e-125 451.8 344 66.9
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 5.2e-125 451.8 336 68.5
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 6.8e-125 451.4 347 67.7
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 8.9e-125 451.1 340 67.9
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.0e-124 449.9 332 69.0
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.4e-124 449.1 345 64.6
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 5.8e-124 448.4 347 65.7
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 5.8e-124 448.4 355 65.9
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 7.5e-124 448.0 341 66.0
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.3e-123 447.2 343 66.5
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.7e-123 446.8 338 66.6
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.7e-123 446.8 343 65.9
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.2e-123 446.4 343 66.5
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.7e-123 445.7 364 63.7
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 6.4e-123 444.9 345 66.4
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.1e-122 444.1 343 66.2
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.1e-122 444.1 365 63.3
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.4e-122 443.7 339 66.4
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.2e-122 442.6 341 66.3
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 9.2e-122 441.0 336 67.9
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 9.2e-122 441.0 366 60.9
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.6e-121 440.3 364 63.7
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.1e-121 439.9 337 65.6
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.5e-121 439.1 344 64.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.0e-121 438.3 351 64.4
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.0e-120 437.6 344 65.1
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.7e-120 436.8 349 64.2
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.3e-120 436.4 337 65.3
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.9e-119 433.3 342 64.6
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.1e-118 429.9 339 64.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 6.8e-117 424.9 345 63.8
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 6.8e-117 424.9 347 62.0
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.8e-117 424.9 368 60.9
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 8.9e-117 424.5 358 63.1
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.5e-116 423.7 347 62.2
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.0e-116 423.3 347 61.7
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 4.4e-116 422.2 335 63.3
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 7.5e-116 421.4 346 63.0
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 3.2e-114 416.0 336 62.2
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.2e-113 414.1 336 62.2
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.6e-113 413.7 358 60.9
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-112 411.0 343 63.3
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 3.6e-110 402.5 344 60.2
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.2e-110 401.7 340 63.2
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 8.1e-110 401.4 367 56.9
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 8.1e-110 401.4 336 62.2
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.4e-109 400.6 324 64.8
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.8e-109 400.2 365 58.6
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 3.4e-108 396.0 329 63.8
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.4e-108 396.0 315 63.2
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 5.8e-108 395.2 335 60.6
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.8e-107 392.5 342 58.2
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.9e-106 390.2 342 59.6
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 3.2e-106 389.4 418 52.2
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.2e-106 389.0 308 64.0
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.0e-105 385.2 366 58.5
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 4.3e-103 379.0 357 55.2
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 8.1e-102 374.8 346 57.8
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 5.3e-101 372.1 333 58.6
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 6.9e-101 371.7 517 44.3
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 7.6e-100 368.2 347 56.8
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.7e-99 367.1 364 54.1
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 6.4e-99 365.2 335 57.0
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.3e-95 352.8 395 50.9
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.4e-92 342.8 412 48.3
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.1e-90 337.8 318 56.9
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 7.1e-90 335.1 356 52.2
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-86 324.3 316 56.0
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 2.6e-84 316.6 155 92.3
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.6e-84 316.6 361 50.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 3.5e-81 306.2 337 50.7
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 1.7e-75 287.3 375 44.8
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 3.2e-74 283.1 369 44.7
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 9.7e-71 271.6 237 61.6
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 9.7e-71 271.6 237 61.6
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.2e-70 270.4 224 59.4
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.3e-67 261.2 225 65.8
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 8.5e-67 258.5 361 43.2
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 7.2e-66 255.4 307 51.1
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.1e-61 240.0 374 40.9
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.4e-60 236.5 213 62.4
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 2.3e-56 223.8 229 48.0
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 6.7e-56 222.2 339 41.3
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 5.7e-55 219.2 189 60.8
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.2e-54 217.2 213 58.2
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.4e-53 214.5 389 38.3
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.2e-46 190.7 173 61.3
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.1e-45 188.3 136 73.5
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 6.3e-38 162.5 130 57.7
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 2.1e-33 147.5 72 86.1
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.8e-30 137.1 352 31.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-29 134.8 384 30.5
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.1e-29 133.3 114 57.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.3e-27 128.3 104 59.6
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.2e-15 88.6 84 58.3
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.0e-13 79.3 63 63.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 3.1e-08 63.9 32 81.2


User provided reference genes

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