Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t53905H Brassica oleracea HOM05D001504 ORTHO05D001394 1.3e-108 396.4 198 100.0
C09p09970 Brassica napus HOM05D001504 ORTHO05D001394 4.7e-106 387.9 198 99.0
BcaC02g11139 Brassica carinata HOM05D001504 ORTHO05D001394 2.6e-40 169.5 108 80.6
C04p20020 Brassica napus HOM05D001504 ORTHO05D001394 2.6e-40 169.5 108 80.6
BraA09t40697Z Brassica rapa HOM05D001504 ORTHO05D001394 4.7e-37 158.7 136 65.4
BcaC07g40559 Brassica carinata HOM05D001504 ORTHO05D001394 3.9e-36 155.6 138 60.9
C08p35390 Brassica napus HOM05D001504 ORTHO05D001394 3.9e-36 155.6 132 65.9
A09p52690 Brassica napus HOM05D001504 ORTHO05D001394 1.9e-30 136.7 121 61.2
Sp5g02820 Schrenkiella parvula HOM05D001504 ORTHO05D001394 5.5e-30 135.2 82 75.6
AT3G60400 Arabidopsis thaliana HOM05D001504 ORTHO05D001394 9.7e-27 124.4 82 69.5
BolC8t51132H Brassica oleracea HOM05D001504 ORTHO05D001394 1.1e-25 120.9 106 63.2
CARHR170720 Cardamine hirsuta HOM05D001504 ORTHO05D001394 1.1e-25 120.9 80 66.2
Aa31LG1G21790 Aethionema arabicum HOM05D001504 ORTHO05D001394 2.0e-24 116.7 82 63.4
Carub.0005s2713 Capsella rubella HOM05D001504 ORTHO05D001394 5.9e-24 115.2 144 47.9
Thhalv10005866m.g Eutrema salsugineum HOM05D001504 ORTHO05D001394 5.5e-22 108.6 65 73.8
THA.LOC104807619 Tarenaya hassleriana HOM05D001504 ORTHO05D001394 2.7e-21 106.3 83 57.8
AL5G42650 Arabidopsis lyrata HOM05D001504 ORTHO05D001394 5.2e-20 102.1 66 69.7
Ciclev10024277m.g Citrus clementina HOM05D001504 ORTHO05D001394 2.0e-19 100.1 101 47.5
QL04p031168 Quercus lobata HOM05D001504 ORTHO05D001394 2.8e-18 96.3 80 53.8
FAN10G1053 Fragaria x ananassa HOM05D001504 ORTHO05D001394 1.8e-17 93.6 148 37.8
Hma1.2p1_1740F.1_g300030 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 1.8e-17 93.6 107 43.0
arahy.Tifrunner.gnm1.ann1.MR7UVE Arachis hypogaea HOM05D002426 ORTHO05D002873 2.4e-17 93.2 80 53.8
Prupe.2G125600 Prunus persica HOM05D001504 ORTHO05D001394 2.4e-17 93.2 107 43.9
FAN10G2602 Fragaria x ananassa HOM05D001504 ORTHO05D001394 3.1e-17 92.8 97 46.4
TWI59G0648 Tripterygium wilfordii HOM05D001504 ORTHO05D001394 3.1e-17 92.8 98 44.9
Gohir.D08G040500 Gossypium hirsutum HOM05D001504 ORTHO05D001394 5.4e-17 92.0 105 46.7
Gorai.004G039400 Gossypium raimondii HOM05D001504 ORTHO05D001394 5.4e-17 92.0 105 46.7
Thecc.01G392100 Theobroma cacao HOM05D001504 ORTHO05D001394 7.0e-17 91.7 80 51.2
Atru.chr10.165 Acer truncatum HOM05D001504 ORTHO05D001394 1.2e-16 90.9 73 54.8
FAN06G0357 Fragaria x ananassa HOM05D001504 ORTHO05D001394 1.6e-16 90.5 97 45.4
FAN06G4583 Fragaria x ananassa HOM05D001504 ORTHO05D001394 1.6e-16 90.5 97 45.4
CSS0011147 Camellia sinensis var. sinensis HOM05D001504 ORTHO05D001394 2.0e-16 90.1 107 40.2
CiPaw.13G028100 Carya illinoinensis HOM05D001504 ORTHO05D001394 2.0e-16 90.1 96 47.9
Duzib138G1733 Durio zibethinus HOM05D001504 ORTHO05D001394 2.0e-16 90.1 94 46.8
Haze_02802 Corylus avellana HOM05D001504 ORTHO05D001394 2.7e-16 89.7 107 43.0
FAN03G1087 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.7e-16 89.7 97 45.4
Gohir.A08G029700 Gossypium hirsutum HOM05D001504 ORTHO05D001394 2.7e-16 89.7 98 48.0
Cfa011093 Carpinus fangiana HOM05D001504 ORTHO05D001394 5.9e-16 88.6 107 42.1
Sopen01g036280 Solanum pennellii HOM05D001504 ORTHO05D001394 1.0e-15 87.8 97 43.3
CSS0010311 Camellia sinensis var. sinensis HOM05D001504 ORTHO05D001394 1.3e-15 87.4 107 39.3
COL.COLO4_12432 Corchorus olitorius HOM05D001504 ORTHO05D001394 1.7e-15 87.0 107 40.2
Ca_08020_v3 Cicer arietinum L. HOM05D001504 ORTHO05D001394 2.2e-15 86.7 80 52.5
MD09G1283700 Malus domestica HOM05D001504 ORTHO05D001394 2.9e-15 86.3 80 45.0
Nn1g00905 Nelumbo nucifera HOM05D001504 ORTHO05D001394 3.8e-15 85.9 107 38.3
Solyc01g090490.1 Solanum lycopersicum HOM05D001504 ORTHO05D001394 5.0e-15 85.5 97 42.3
MD00G1041100 Malus domestica HOM05D001504 ORTHO05D001394 1.1e-14 84.3 80 47.5
Dinv43637 Davidia involucrata HOM05D001504 ORTHO05D001394 1.5e-14 84.0 80 43.8
Lj7A543T35 Lonicera japonica HOM05D001504 ORTHO05D001394 1.5e-14 84.0 88 45.5
Lalb_Chr13g0290471 Lupinus albus HOM05D001504 ORTHO05D001394 1.5e-14 84.0 90 46.7
TAR629G1089 Trochodendron aralioides HOM05D001504 ORTHO05D001394 1.5e-14 84.0 80 50.0
Cpa.g.sc101.32 Carica papaya HOM05D001504 ORTHO05D001394 1.9e-14 83.6 73 47.9
PGSC0003DMG400026040 Solanum tuberosum HOM05D001504 ORTHO05D001394 1.9e-14 83.6 110 38.2
Manes.01G271800 Manihot esculenta HOM05D001504 ORTHO05D001394 5.5e-14 82.0 80 40.0
Oeu035668.1 Olea europaea HOM05D001504 ORTHO05D001394 9.4e-14 81.3 106 40.6
CANSAT11G0282 Cannabis sativa HOM05D001504 ORTHO05D001394 3.6e-13 79.3 83 42.2
Medtr7g080620 Medicago truncatula HOM05D001504 ORTHO05D001394 3.6e-13 79.3 73 49.3
arahy.Tifrunner.gnm1.ann1.CKY0R5 Arachis hypogaea HOM05D001504 ORTHO05D001394 6.1e-13 78.6 113 38.1
Lj1g0016624 Lotus japonicus HOM05D001504 ORTHO05D001394 6.1e-13 78.6 82 48.8
Sc25g0000030 Simmondsia chinensis HOM05D001504 ORTHO05D001394 6.1e-13 78.6 106 37.7
Medtr8g005155 Medicago truncatula HOM05D001504 ORTHO05D001394 1.0e-12 77.8 92 42.4
Actinidia12655 Actinidia chinensis HOM05D001504 ORTHO05D001394 1.4e-12 77.4 80 43.8
Actinidia12657 Actinidia chinensis HOM05D001504 ORTHO05D001394 1.8e-12 77.0 108 38.0
Lj3g0023415 Lotus japonicus HOM05D001504 ORTHO05D001394 1.8e-12 77.0 81 46.9
MSTRG.28157 Avicennia marina HOM05D001504 ORTHO05D001394 2.3e-12 76.6 73 46.6
CAN.G362.14 Capsicum annuum HOM05D001504 ORTHO05D001394 2.3e-12 76.6 80 40.0
EL10Ac1g00788 Beta vulgaris HOM05D001504 ORTHO05D001394 4.0e-12 75.9 71 43.7
DCAR_025073 Daucus carota HOM05D001504 ORTHO05D001394 4.0e-12 75.9 73 45.2
Ca_14053_v3 Cicer arietinum L. HOM05D001504 ORTHO05D001394 5.2e-12 75.5 95 41.1
FvH4_7g09760 Fragaria vesca HOM05D001504 ORTHO05D001394 5.2e-12 75.5 80 46.2
CANSAT35G0026 Cannabis sativa HOM05D001504 ORTHO05D001394 6.8e-12 75.1 148 31.1
BcaC02g11140 Brassica carinata HOM05D001504 ORTHO05D095983 8.8e-12 74.7 37 94.6
arahy.Tifrunner.gnm1.ann1.EKL24D Arachis hypogaea HOM05D001504 ORTHO05D001394 1.5e-11 73.9 113 36.3
Psat4g225480 Pisum sativum HOM05D001504 ORTHO05D001394 1.5e-11 73.9 95 41.1
Migut.N01753 Erythranthe guttata HOM05D001504 ORTHO05D001394 2.6e-11 73.2 73 43.8
Migut.O00538 Erythranthe guttata HOM05D001504 ORTHO05D001394 3.4e-11 72.8 73 43.8
Sed0024200 Sechium edule HOM05D001504 ORTHO05D001394 4.4e-11 72.4 78 38.5
RcHm_v2.0_Chr1g0346761 Rosa chinensis HOM05D001504 ORTHO05D001394 5.7e-11 72.0 90 43.3
SalBow5G3598 Salvia bowleyana HOM05D001504 ORTHO05D001394 1.7e-10 70.5 73 41.1
TPR.G33114 Trifolium pratense HOM05D001504 ORTHO05D001394 2.2e-10 70.1 95 37.9
Sabra14G0032700 Salix brachista HOM05D001504 ORTHO05D001394 2.8e-10 69.7 80 41.2
PGR042G1724 Punica granatum HOM05D001504 ORTHO05D001394 4.9e-10 68.9 78 43.6
AUR62013723 Chenopodium quinoa HOM05D001504 ORTHO05D001394 6.3e-10 68.6 89 36.0
Potri.014G044900 Populus trichocarpa HOM05D001504 ORTHO05D001394 1.1e-09 67.8 79 40.5
ECA233G5731 Erigeron canadensis HOM05D001504 ORTHO05D001394 1.4e-09 67.4 106 35.8
HPP92_006119 Vanilla planifolia HOM05D001504 ORTHO05D001394 1.4e-09 67.4 84 33.3
Ah.05g173140 Amaranthus hybridus HOM05D001504 ORTHO05D001394 3.1e-09 66.2 89 32.6
CDE05G0738 Ceratophyllum demersum HOM05D001504 ORTHO05D001394 4.1e-09 65.9 70 44.3
Sed0013978 Sechium edule HOM05D001504 ORTHO05D001394 9.2e-09 64.7 79 35.4
VMungo0331G1862 Vigna mungo HOM05D001504 ORTHO05D001394 1.2e-08 64.3 92 41.3
Glyma.03G114500 Glycine max HOM05D001504 ORTHO05D001394 1.6e-08 63.9 96 39.6
AUR62023431 Chenopodium quinoa HOM05D001504 ORTHO05D001394 2.0e-08 63.5 89 33.7
Cpa.g.sc6.426 Carica papaya HOM05D001830 ORTHO05D001394 1.0e-07 61.2 76 38.2
Peaxi162Scf00392g00028 Petunia axillaris HOM05D001504 ORTHO05D001394 1.0e-07 61.2 86 36.0
Nitab4.5_0002874g0060 Nicotiana tabacum HOM05D001504 ORTHO05D001394 1.3e-07 60.8 57 47.4
Nitab4.5_0003553g0100 Nicotiana tabacum HOM05D001504 ORTHO05D001394 2.3e-07 60.1 57 47.4
unitig_578.g16713 Utricularia gibba HOM05D001504 ORTHO05D001394 2.9e-07 59.7 78 35.9
HanXRQChr10g0288521 Helianthus annuus HOM05D001504 ORTHO05D001394 5.0e-07 58.9 104 29.8
Phvul.010G052250 Phaseolus vulgaris HOM05D001504 ORTHO05D001394 8.6e-07 58.2 91 37.4
Glyma.07G112100 Glycine max HOM05D001504 ORTHO05D001394 1.5e-06 57.4 114 33.3
Lsat_1_v5_gn_2_27920 Lactuca sativa HOM05D001504 ORTHO05D001394 2.5e-06 56.6 69 34.8


User provided reference genes

Program Settings