Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t53492H Brassica oleracea HOM05D008387 ORTHO05D010446 1.0e-260 902.9 461 100.0
C09p05640 Brassica napus HOM05D008387 ORTHO05D010446 6.2e-242 840.5 461 95.4
BcaC04g23695 Brassica carinata HOM05D008387 ORTHO05D010446 1.9e-150 536.6 373 79.4
A09p05180 Brassica napus HOM05D008387 ORTHO05D010446 1.3e-117 427.6 375 65.1
C09p05610 Brassica napus HOM05D008387 ORTHO05D010446 8.1e-117 424.9 381 63.5
BcaC04g23696 Brassica carinata HOM05D008387 ORTHO05D010446 2.4e-116 423.3 381 63.3
BraA09t36157Z Brassica rapa HOM05D008387 ORTHO05D010446 9.0e-116 421.4 368 65.8
BolC9t53489H Brassica oleracea HOM05D008387 ORTHO05D010446 2.6e-115 419.9 371 64.4
C09p05620 Brassica napus HOM05D008387 ORTHO05D010446 8.7e-111 404.8 372 64.8
BolC9t53490H Brassica oleracea HOM05D008387 ORTHO05D010446 4.3e-110 402.5 373 64.9
A09p05190 Brassica napus HOM05D008387 ORTHO05D010446 1.4e-108 397.5 373 64.3
BcaB04g19657 Brassica carinata HOM05D008387 ORTHO05D010446 1.9e-94 350.5 428 53.3
Thhalv10003597m.g Eutrema salsugineum HOM05D008387 ORTHO05D010446 2.1e-88 330.5 399 53.9
BcaB04g19656 Brassica carinata HOM05D008387 ORTHO05D010446 9.1e-84 315.1 394 54.8
Sp2g20470 Schrenkiella parvula HOM05D008387 ORTHO05D010446 1.2e-83 314.7 398 51.0
C07p40540 Brassica napus HOM05D008387 ORTHO05D010446 2.5e-81 307.0 439 47.4
BolC7t44591H Brassica oleracea HOM05D008387 ORTHO05D010446 2.5e-81 307.0 439 47.4
AL6G39870 Arabidopsis lyrata HOM05D008387 ORTHO05D010446 3.6e-80 303.1 420 48.3
BcaC04g23553 Brassica carinata HOM05D008387 ORTHO05D010446 4.6e-80 302.8 324 59.9
A06p37680 Brassica napus HOM05D008387 ORTHO05D010446 1.1e-78 298.1 430 47.7
BraA06t26688Z Brassica rapa HOM05D008387 ORTHO05D010446 1.1e-78 298.1 430 47.7
AT5G27220 Arabidopsis thaliana HOM05D008387 ORTHO05D010446 5.5e-73 279.3 415 46.5
Carub.0006s2529 Capsella rubella HOM05D008387 ORTHO05D010446 9.7e-62 241.9 416 43.0
CARHR185830 Cardamine hirsuta HOM05D008387 ORTHO05D010446 2.8e-53 213.8 382 41.6
Aa31LG11G8960 Aethionema arabicum HOM05D008387 ORTHO05D010446 1.9e-41 174.5 360 38.3
Aa31LG11G9020 Aethionema arabicum HOM05D008387 ORTHO05D010446 1.1e-31 142.1 235 44.3
C03p10830 Brassica napus HOM05D004375 ORTHO05D008558 7.5e-30 136.0 111 60.4
BolC9t53488H Brassica oleracea HOM05D008387 ORTHO05D010446 1.1e-25 122.1 116 62.9
Aa31LG5G15460 Aethionema arabicum HOM05D008387 ORTHO05D010446 2.1e-24 117.9 310 32.3
Aa31LG11G8970 Aethionema arabicum HOM05D008387 ORTHO05D010446 1.8e-23 114.8 226 35.4
Carub.0003s0421 Capsella rubella HOM05D008387 ORTHO05D010446 6.8e-23 112.8 176 39.8
AL294U10020 Arabidopsis lyrata HOM05D000160 ORTHO05D010446 9.9e-22 109.0 325 29.8
BolC1t02944H Brassica oleracea HOM05D004375 ORTHO05D016090 1.7e-21 108.2 110 51.8
BraA01t02895Z Brassica rapa HOM05D029054 ORTHO05D024058 2.2e-21 107.8 110 54.5
BcaC09g50012 Brassica carinata HOM05D004375 ORTHO05D016090 2.9e-21 107.5 230 37.0
BcaC04g20539 Brassica carinata HOM05D030300 ORTHO05D032481 6.4e-21 106.3 110 50.9
AL8G13560 Arabidopsis lyrata HOM05D008628 ORTHO05D010443 1.6e-19 101.7 260 30.4
AL8G13590 Arabidopsis lyrata HOM05D000005 ORTHO05D010446 1.6e-19 101.7 260 30.4
C05p62280 Brassica napus HOM05D008387 ORTHO05D010446 6.0e-19 99.8 128 46.1
BolC5t34883H Brassica oleracea HOM05D008387 ORTHO05D010446 2.3e-18 97.8 125 44.8
A05p42600 Brassica napus HOM05D000160 ORTHO05D010446 3.9e-18 97.1 128 46.1
THA.LOC104818665 Tarenaya hassleriana HOM05D008387 ORTHO05D010446 5.1e-18 96.7 259 31.3
Thhalv10000910m.g Eutrema salsugineum HOM05D008387 ORTHO05D010446 8.6e-18 95.9 278 29.5
BraA05t22993Z Brassica rapa HOM05D000160 ORTHO05D010446 1.5e-17 95.1 128 45.3
CARHR079300 Cardamine hirsuta HOM05D008387 ORTHO05D010446 4.3e-17 93.6 247 31.2
BcaC04g23067 Brassica carinata HOM05D004375 ORTHO05D008558 6.2e-16 89.7 132 36.4
BolC9t56012H Brassica oleracea HOM05D004375 ORTHO05D008558 6.8e-15 86.3 139 34.5
BcaC03g15251 Brassica carinata HOM05D004375 ORTHO05D008558 1.5e-14 85.1 101 42.6
BcaC03g15252 Brassica carinata HOM05D004375 ORTHO05D008558 1.5e-14 85.1 101 42.6
C01p25790 Brassica napus HOM05D004375 ORTHO05D008558 1.5e-14 85.1 101 42.6
C07p19300 Brassica napus HOM05D004375 ORTHO05D008558 1.5e-14 85.1 101 42.6
BcaC03g14687 Brassica carinata HOM05D004375 ORTHO05D008558 2.0e-14 84.7 102 42.2
BolC2t08885H Brassica oleracea HOM05D004375 ORTHO05D008558 2.6e-14 84.3 101 42.6
C09p31570 Brassica napus HOM05D004375 ORTHO05D008558 4.4e-14 83.6 111 38.7
BcaB02g10241 Brassica carinata HOM05D004375 ORTHO05D008558 5.8e-14 83.2 119 38.7
C02p27860 Brassica napus HOM05D004375 ORTHO05D008558 5.8e-14 83.2 101 42.6
BcaB03g15947 Brassica carinata HOM05D004375 ORTHO05D008558 7.6e-14 82.8 100 41.0
BcaB03g16500 Brassica carinata HOM05D004375 ORTHO05D008558 7.6e-14 82.8 99 40.4
BcaB05g23703 Brassica carinata HOM05D004375 ORTHO05D008558 7.6e-14 82.8 101 40.6
BolC3t21361H Brassica oleracea HOM05D004375 ORTHO05D008558 1.7e-13 81.6 159 32.1
BcaC01g06196 Brassica carinata HOM05D004375 ORTHO05D008558 2.2e-13 81.3 101 41.6
BcaB05g23867 Brassica carinata HOM05D004375 ORTHO05D008558 2.9e-13 80.9 119 37.8
BcaC03g14060 Brassica carinata HOM05D004375 ORTHO05D024058 3.8e-13 80.5 110 45.5
BcaB01g04420 Brassica carinata HOM05D004375 ORTHO05D008558 4.9e-13 80.1 99 40.4
BcaC06g34457 Brassica carinata HOM05D008387 ORTHO05D010446 4.9e-13 80.1 151 37.7
C01p14320 Brassica napus HOM05D004375 ORTHO05D008558 4.9e-13 80.1 84 44.0
C07p28290 Brassica napus HOM05D008387 ORTHO05D010446 4.9e-13 80.1 151 37.7
BolC1t02527H Brassica oleracea HOM05D004375 ORTHO05D008558 4.9e-13 80.1 84 44.0
BolC7t43370H Brassica oleracea HOM05D008387 ORTHO05D010446 4.9e-13 80.1 151 37.7
BcaB06g26290 Brassica carinata HOM05D004375 ORTHO05D008558 6.4e-13 79.7 125 37.6
BcaB01g03503 Brassica carinata HOM05D004375 ORTHO05D008558 8.4e-13 79.3 161 32.3
Carub.0008s0289 Capsella rubella HOM05D008387 ORTHO05D010446 8.4e-13 79.3 120 41.7
BcaB05g23011 Brassica carinata HOM05D004375 ORTHO05D008558 1.1e-12 79.0 101 39.6
BcaB07g33031 Brassica carinata HOM05D004375 ORTHO05D008558 1.4e-12 78.6 99 39.4
BolC2t08831H Brassica oleracea HOM05D004375 ORTHO05D008558 1.4e-12 78.6 84 44.0
BcaB05g21909 Brassica carinata HOM05D004375 ORTHO05D008558 2.4e-12 77.8 125 36.8
A07p43390 Brassica napus HOM05D004375 ORTHO05D008558 5.4e-12 76.6 98 41.8
BraA09t39239Z Brassica rapa HOM05D004375 ORTHO05D008558 5.4e-12 76.6 84 40.5
A03p67640 Brassica napus HOM05D004375 ORTHO05D008558 2.7e-11 74.3 96 38.5
BcaB08g35442 Brassica carinata HOM05D004375 ORTHO05D008558 3.5e-11 73.9 123 37.4
C06p03140 Brassica napus HOM05D004375 ORTHO05D016039 3.5e-11 73.9 98 40.8
BolC6t35432H Brassica oleracea HOM05D004375 ORTHO05D016039 3.5e-11 73.9 98 40.8
Medtr4g095080 Medicago truncatula HOM05D000439 ORTHO05D001363 4.6e-11 73.6 123 33.3
Actinidia36450 Actinidia chinensis HOM05D000702 ORTHO05D001796 6.0e-11 73.2 130 33.1
A05p24120 Brassica napus HOM05D004375 ORTHO05D016039 6.0e-11 73.2 89 38.2
Hma1.2p1_1039F.1_g250775 Hydrangea macrophylla HOM05D000439 ORTHO05D001363 6.0e-11 73.2 182 31.3
BcaC08g43054 Brassica carinata HOM05D004375 ORTHO05D016039 7.8e-11 72.8 98 39.8
Actinidia04648 Actinidia chinensis HOM05D000439 ORTHO05D001363 1.0e-10 72.4 127 33.1
Cfa004083 Carpinus fangiana HOM05D000439 ORTHO05D001363 1.0e-10 72.4 123 34.1
Haze_15331 Corylus avellana HOM05D000439 ORTHO05D001363 1.0e-10 72.4 123 34.1
A10p10570 Brassica napus HOM05D004375 ORTHO05D016039 1.7e-10 71.6 89 38.2
CiPaw.01G008800 Carya illinoinensis HOM05D000439 ORTHO05D001363 2.3e-10 71.2 123 31.7
Nitab4.5_0002605g0050 Nicotiana tabacum HOM05D000439 ORTHO05D001363 3.0e-10 70.9 185 30.3
BcaB01g03413 Brassica carinata HOM05D004375 ORTHO05D000395 3.9e-10 70.5 84 38.1
CiPaw.07G011500 Carya illinoinensis HOM05D000439 ORTHO05D002302 8.7e-10 69.3 127 33.1
Sp4g06040 Schrenkiella parvula HOM05D004375 ORTHO05D008558 8.7e-10 69.3 75 46.7
TAR625G0925 Trochodendron aralioides HOM05D000439 ORTHO05D001363 8.7e-10 69.3 123 34.1
BcaC03g15201 Brassica carinata HOM05D004375 ORTHO05D008558 1.1e-09 68.9 64 48.4
CANSAT01G0256 Cannabis sativa HOM05D000439 ORTHO05D001363 1.1e-09 68.9 126 33.3
Manes.13G115800 Manihot esculenta HOM05D000439 ORTHO05D001363 1.5e-09 68.6 120 36.7
Sopen04g004020 Solanum pennellii HOM05D000439 ORTHO05D001363 1.9e-09 68.2 114 33.3
MBI16_g15950_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D001363 2.5e-09 67.8 116 36.2
Solyc04g008840.3 Solanum lycopersicum HOM05D000439 ORTHO05D001363 2.5e-09 67.8 114 33.3
PSO675G5826 Papaver somniferum HOM05D000439 ORTHO05D001363 3.3e-09 67.4 129 33.3
Sabra07G0045000 Salix brachista HOM05D000439 ORTHO05D001363 3.3e-09 67.4 132 31.8
CSS0022440 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D001363 4.3e-09 67.0 137 32.1
Ciclev10025275m.g Citrus clementina HOM05D000439 ORTHO05D001363 4.3e-09 67.0 123 34.1
PSO541G3118 Papaver somniferum HOM05D000439 ORTHO05D001363 5.6e-09 66.6 129 32.6
PGSC0003DMG400025294 Solanum tuberosum HOM05D000439 ORTHO05D001363 5.6e-09 66.6 114 32.5
Atru.chr3.219 Acer truncatum HOM05D000439 ORTHO05D001363 9.6e-09 65.9 122 32.0
Atru.chr3.230 Acer truncatum HOM05D000439 ORTHO05D001363 9.6e-09 65.9 122 32.0
Potri.007G050800 Populus trichocarpa HOM05D000439 ORTHO05D001363 9.6e-09 65.9 132 31.1
Prupe.6G225800 Prunus persica HOM05D000439 ORTHO05D001363 2.1e-08 64.7 127 29.1
Sc06g0006580 Simmondsia chinensis HOM05D000439 ORTHO05D001363 2.1e-08 64.7 110 34.5
PSO541G5260 Papaver somniferum HOM05D000439 ORTHO05D001363 2.8e-08 64.3 118 33.1
Thecc.05G251400 Theobroma cacao HOM05D000439 ORTHO05D002302 2.8e-08 64.3 187 26.2
Lalb_Chr16g0389031 Lupinus albus HOM05D000439 ORTHO05D001363 3.6e-08 63.9 127 33.1
vmacro05235 Vaccinium macrocarpon HOM05D000439 ORTHO05D001363 3.6e-08 63.9 143 31.5
CSS0035650 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D001363 1.1e-07 62.4 114 33.3
Thecc.01G066600 Theobroma cacao HOM05D000439 ORTHO05D001363 1.1e-07 62.4 123 32.5
BcaB06g26129 Brassica carinata HOM05D004375 ORTHO05D016039 1.4e-07 62.0 163 31.3
Ca_20059_v3 Cicer arietinum L. HOM05D000439 ORTHO05D002302 1.4e-07 62.0 208 26.0
Duzib147G1046 Durio zibethinus HOM05D000439 ORTHO05D001363 1.4e-07 62.0 123 31.7
ECA232G4538 Erigeron canadensis HOM05D000439 ORTHO05D001363 1.4e-07 62.0 119 28.6
Gohir.A10G090400 Gossypium hirsutum HOM05D000439 ORTHO05D001363 1.8e-07 61.6 129 31.8
Gorai.011G107000 Gossypium raimondii HOM05D000439 ORTHO05D001363 1.8e-07 61.6 129 31.8
Gohir.D11G246820 Gossypium hirsutum HOM05D000439 ORTHO05D002302 2.4e-07 61.2 113 35.4
MD02G1180500 Malus domestica HOM05D000439 ORTHO05D001363 3.1e-07 60.8 121 28.9
Gohir.D10G097500 Gossypium hirsutum HOM05D000439 ORTHO05D001363 5.2e-07 60.1 129 31.8
TWI53G2042 Tripterygium wilfordii HOM05D000439 ORTHO05D001363 5.2e-07 60.1 123 30.9
Glyma.08G325700 Glycine max HOM05D000439 ORTHO05D001363 9.0e-07 59.3 98 30.6
Dinv26587 Davidia involucrata HOM05D000439 ORTHO05D002302 1.2e-06 58.9 174 27.0
Eucgr.I00737 Eucalyptus grandis HOM05D000439 ORTHO05D001363 1.2e-06 58.9 118 30.5
Prupe.6G334200 Prunus persica HOM05D000439 ORTHO05D002302 1.2e-06 58.9 116 30.2
Gorai.007G262900 Gossypium raimondii HOM05D000439 ORTHO05D002302 2.0e-06 58.2 205 29.3
CSS0001274 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D001363 2.6e-06 57.8 124 29.8
Lj3g0018169 Lotus japonicus HOM05D000439 ORTHO05D002302 2.6e-06 57.8 111 31.5
Ah.06g190500 Amaranthus hybridus HOM05D000439 ORTHO05D018269 3.4e-06 57.4 131 32.1
AL3G11490 Arabidopsis lyrata HOM05D008387 ORTHO05D010446 3.4e-06 57.4 124 33.1
COL.COLO4_11512 Corchorus olitorius HOM05D000702 ORTHO05D001363 3.4e-06 57.4 125 28.8
Gohir.A11G236340 Gossypium hirsutum HOM05D000439 ORTHO05D002302 3.4e-06 57.4 115 33.9
Gohir.D11G246880 Gossypium hirsutum HOM05D000160 ORTHO05D002302 3.4e-06 57.4 115 33.9
Gorai.007G263000 Gossypium raimondii HOM05D000439 ORTHO05D001363 3.4e-06 57.4 115 33.9
PGR004G2855 Punica granatum HOM05D000439 ORTHO05D001363 3.4e-06 57.4 159 27.0
Lj4g0018346 Lotus japonicus HOM05D000439 ORTHO05D002302 4.4e-06 57.0 115 31.3
Nn1g03256 Nelumbo nucifera HOM05D000439 ORTHO05D001363 4.4e-06 57.0 200 25.5
Atru.chr2.611 Acer truncatum HOM05D000439 ORTHO05D002302 5.8e-06 56.6 113 34.5
Aqoxy5G00467 Aquilegia oxysepala HOM05D000439 ORTHO05D006172 5.8e-06 56.6 146 28.8
MBI16_g11555_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D001363 5.8e-06 56.6 131 28.2
TPR.G32660 Trifolium pratense HOM05D000439 ORTHO05D002302 5.8e-06 56.6 120 29.2
Eucgr.K02358 Eucalyptus grandis HOM05D000439 ORTHO05D001363 7.6e-06 56.2 225 24.9
Nn7g37467 Nelumbo nucifera HOM05D000439 ORTHO05D001363 7.6e-06 56.2 122 28.7
Rhsim10G0105200 Rhododendron simsii HOM05D000439 ORTHO05D001363 7.6e-06 56.2 132 31.1
CSS0036023 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 9.9e-06 55.8 153 30.7
MD04G1214700 Malus domestica HOM05D000439 ORTHO05D002302 9.9e-06 55.8 108 32.4
Rhsim06G0226500 Rhododendron simsii HOM05D000439 ORTHO05D000761 9.9e-06 55.8 111 32.4


User provided reference genes

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