Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 2.8e-43 178.3 98 100.0
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 4.5e-17 91.3 51 88.2
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.7e-16 89.4 51 84.3
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 2.2e-16 89.0 51 86.3
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 2.9e-16 88.6 51 86.3
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.9e-16 88.6 51 84.3
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 3.8e-16 88.2 51 90.2
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.1e-15 86.7 52 84.6
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-15 86.7 52 84.6
C09p05140 Brassica napus HOM05D005061 ORTHO05D006001 1.5e-15 86.3 49 91.8
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.5e-15 86.3 51 82.4
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 2.5e-15 85.5 51 84.3
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 2.5e-15 85.5 51 84.3
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 2.5e-15 85.5 51 84.3
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 5.5e-15 84.3 51 80.4
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 8.0e-14 80.5 51 80.4
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 4.0e-13 78.2 51 80.4
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 2.6e-12 75.5 52 76.9
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 4.4e-12 74.7 51 72.5
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 5.7e-12 74.3 50 70.0
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.3e-11 73.2 52 73.1
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 2.8e-11 72.0 48 72.9
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.8e-11 72.0 48 72.9
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 6.3e-11 70.9 52 71.2
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 6.3e-11 70.9 48 68.8
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.4e-10 68.9 52 71.2
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 3.1e-10 68.6 47 70.2
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 4.1e-10 68.2 50 66.0
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 7.0e-10 67.4 48 66.7
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 9.1e-10 67.0 52 71.2
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 9.1e-10 67.0 48 64.6
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 9.1e-10 67.0 44 77.3
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.6e-09 66.2 47 66.0
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.0e-09 65.9 47 68.1
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.0e-09 65.9 47 68.1
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 2.7e-09 65.5 53 62.3
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.7e-09 65.5 53 62.3
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 2.7e-09 65.5 53 62.3
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 3.5e-09 65.1 50 64.0
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.5e-09 64.7 48 64.6
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 7.7e-09 63.9 47 66.0
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 7.7e-09 63.9 47 63.8
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 7.7e-09 63.9 47 68.1
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 7.7e-09 63.9 47 68.1
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.0e-08 63.5 48 62.5
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 1.3e-08 63.2 45 64.4
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 1.3e-08 63.2 47 63.8
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 2.2e-08 62.4 47 63.8
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 2.2e-08 62.4 47 63.8
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.9e-08 62.0 47 63.8
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.9e-08 62.0 47 68.1
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 3.8e-08 61.6 48 60.4
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 3.8e-08 61.6 47 61.7
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 3.8e-08 61.6 47 61.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 5.0e-08 61.2 50 64.0
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 5.0e-08 61.2 47 63.8
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 5.0e-08 61.2 46 60.9
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 5.0e-08 61.2 82 43.9
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 6.5e-08 60.8 48 60.4
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 8.5e-08 60.5 48 58.3
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 8.5e-08 60.5 51 60.8
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 1.5e-07 59.7 48 62.5
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.5e-07 59.7 48 60.4
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 1.9e-07 59.3 47 57.4
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 2.5e-07 58.9 47 61.7
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 2.5e-07 58.9 53 58.5
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 2.5e-07 58.9 47 61.7
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.2e-07 58.5 48 62.5
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 3.2e-07 58.5 47 63.8
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 3.2e-07 58.5 47 63.8
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 3.2e-07 58.5 48 60.4
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 3.2e-07 58.5 47 61.7
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 4.2e-07 58.2 47 59.6
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 5.5e-07 57.8 46 63.0
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 5.5e-07 57.8 47 61.7
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 5.5e-07 57.8 47 61.7
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 7.2e-07 57.4 47 57.4
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 1.6e-06 56.2 47 53.2
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 2.1e-06 55.8 48 58.3
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 2.7e-06 55.5 35 74.3
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.6e-06 55.1 48 56.2
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 6.1e-06 54.3 44 61.4
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 8.0e-06 53.9 37 73.0


User provided reference genes

Program Settings