Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 7.2e-110 400.6 203 100.0
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 6.3e-106 387.5 198 98.0
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 1.8e-105 386.0 198 97.5
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 3.0e-100 368.6 203 93.6
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 3.0e-100 368.6 203 93.6
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 9.5e-94 347.1 198 89.4
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 2.7e-88 328.9 198 84.3
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 1.2e-85 320.1 198 82.8
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 1.4e-84 316.6 198 81.3
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 2.6e-83 312.4 199 81.4
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 1.3e-82 310.1 198 80.3
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 3.7e-82 308.5 198 80.3
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 6.4e-82 307.8 199 79.4
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 2.6e-75 285.8 203 74.4
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 7.5e-75 284.3 205 74.1
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 8.4e-66 254.2 143 87.4
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 1.2e-64 250.4 199 66.3
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 6.0e-64 248.1 200 66.0
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 1.7e-63 246.5 204 66.2
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 3.9e-63 245.4 205 64.4
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 3.9e-63 245.4 205 63.9
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 3.9e-63 245.4 199 64.8
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 5.1e-63 245.0 206 64.1
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 1.5e-62 243.4 202 64.4
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 2.5e-62 242.7 207 66.2
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 3.3e-62 242.3 205 63.4
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 5.6e-62 241.5 252 57.1
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 9.6e-62 240.7 202 62.4
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 1.6e-61 240.0 206 63.6
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 2.8e-61 239.2 204 64.2
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 4.7e-61 238.4 202 63.4
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 3.1e-60 235.7 220 60.5
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 5.2e-60 235.0 199 64.3
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 6.8e-60 234.6 199 64.8
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 2.0e-59 233.0 197 62.9
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 2.6e-59 232.6 204 62.7
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 3.4e-59 232.3 198 62.1
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 3.4e-59 232.3 208 62.0
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 3.4e-59 232.3 204 62.3
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 3.4e-59 232.3 203 63.5
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 5.8e-59 231.5 208 60.1
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 1.3e-58 230.3 198 60.1
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 1.3e-58 230.3 206 60.2
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 1.7e-58 229.9 200 62.0
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 4.9e-58 228.4 202 60.9
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 4.9e-58 228.4 204 62.3
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 4.9e-58 228.4 209 59.8
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 2.4e-57 226.1 206 59.2
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 2.4e-57 226.1 197 62.4
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 3.2e-57 225.7 197 60.9
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 5.4e-57 224.9 206 59.7
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 5.4e-57 224.9 202 61.4
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 9.3e-57 224.2 218 55.5
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 1.6e-56 223.4 124 86.3
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 2.7e-56 222.6 195 58.5
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 3.5e-56 222.2 203 60.6
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 1.0e-55 220.7 201 57.7
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 3.0e-55 219.2 208 58.7
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 3.0e-55 219.2 198 59.1
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 6.6e-55 218.0 198 58.6
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 8.7e-55 217.6 199 61.3
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 1.1e-54 217.2 205 57.1
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 2.5e-54 216.1 203 55.7
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 9.6e-54 214.2 222 54.1
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 1.3e-53 213.8 198 58.1
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 1.3e-53 213.8 205 55.1
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 1.6e-53 213.4 203 58.1
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 8.1e-53 211.1 201 58.2
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 1.8e-52 209.9 200 60.0
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.6e-51 206.1 218 54.1
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 7.6e-51 204.5 198 53.5
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 1.7e-50 203.4 196 55.6
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 3.8e-50 202.2 212 54.7
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 4.9e-50 201.8 202 53.0
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 3.2e-49 199.1 195 54.9
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 4.2e-49 198.7 176 59.7
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 7.1e-49 198.0 199 56.8
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 4.6e-48 195.3 195 55.9
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 7.9e-48 194.5 197 56.3
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 3.0e-47 192.6 184 57.6
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 8.7e-47 191.0 143 70.6
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 1.5e-46 190.3 199 54.3
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 1.9e-46 189.9 138 70.3
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 1.6e-45 186.8 177 55.9
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 3.6e-45 185.7 147 66.0
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 1.4e-44 183.7 104 82.7
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 2.4e-44 183.0 201 53.2
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 3.1e-44 182.6 147 63.3
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 3.1e-44 182.6 216 47.2
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 2.9e-42 176.0 206 51.5
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 1.4e-41 173.7 134 65.7
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 1.1e-38 164.1 136 56.6
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 3.3e-38 162.5 149 56.4
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 8.1e-37 157.9 159 50.9
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 1.1e-36 157.5 292 37.0
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 2.5e-33 146.4 268 36.9
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 3.5e-32 142.5 162 50.6
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 3.5e-32 142.5 130 60.8
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 2.3e-31 139.8 152 48.7
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 3.9e-31 139.0 149 50.3
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 1.1e-28 131.0 96 75.0
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 1.5e-27 127.1 115 61.7
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 1.1e-22 110.9 120 55.0
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.4e-20 104.0 201 37.3
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 3.2e-17 92.8 88 54.5
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 6.1e-16 88.6 96 53.1
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 1.4e-15 87.4 88 56.8
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 6.7e-15 85.1 78 60.3
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 3.3e-14 82.8 155 31.6
Hund18476 Selenicereus undatus HOM05D007131 ORTHO05D009026 9.4e-09 64.7 130 34.6
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.2e-08 64.3 80 47.5
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 1.6e-08 63.9 125 35.2


User provided reference genes

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