Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 4.7e-222 774.2 397 100.0
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 4.7e-222 774.2 397 100.0
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 8.3e-219 763.5 397 98.5
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 2.7e-217 758.4 397 97.7
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 2.9e-216 755.0 397 97.5
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 5.8e-212 740.7 397 95.5
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 3.2e-202 708.4 398 92.2
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 5.2e-197 691.0 398 89.2
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 3.4e-196 688.3 399 89.5
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 1.3e-195 686.4 398 88.2
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 3.2e-194 681.8 398 88.4
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 4.4e-188 661.4 397 88.2
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.3e-184 649.8 392 86.7
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 6.9e-181 637.5 400 82.2
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 1.4e-157 560.1 410 74.9
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 8.4e-155 550.8 381 77.2
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 3.2e-154 548.9 398 74.4
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 3.2e-154 548.9 400 72.8
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 9.3e-154 547.4 388 74.5
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 4.6e-153 545.0 395 72.7
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 7.9e-153 544.3 404 72.3
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 1.3e-152 543.5 386 74.6
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 1.3e-152 543.5 395 72.2
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 4.3e-151 538.5 406 71.9
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.3e-150 537.0 412 70.4
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 4.8e-150 535.0 362 77.1
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 6.3e-150 534.6 368 76.4
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 8.2e-150 534.3 370 74.1
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.1e-149 532.3 408 70.3
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 3.1e-149 532.3 346 78.0
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 3.1e-149 532.3 384 73.4
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 5.3e-149 531.6 364 75.8
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 1.5e-148 530.0 416 68.5
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 4.5e-148 528.5 407 70.3
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 7.7e-148 527.7 354 75.4
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 7.7e-148 527.7 402 70.4
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.0e-147 527.3 362 75.1
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.3e-147 526.9 407 70.0
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 2.2e-147 526.2 391 72.1
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 2.9e-147 525.8 360 76.1
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 5.0e-147 525.0 407 70.0
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 1.1e-146 523.9 407 68.6
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.9e-146 523.1 402 69.7
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.9e-146 523.1 402 69.7
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 1.9e-146 523.1 346 77.7
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 2.5e-146 522.7 356 74.7
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 5.5e-146 521.5 378 71.7
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 9.4e-146 520.8 402 69.7
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 1.2e-145 520.4 344 79.4
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 2.1e-145 519.6 377 72.4
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 3.6e-145 518.8 392 70.9
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 7.9e-145 517.7 364 73.6
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 2.3e-144 516.2 362 73.8
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 2.3e-144 516.2 393 72.0
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 3.9e-144 515.4 363 75.5
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 1.5e-143 513.5 364 74.5
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 2.5e-143 512.7 387 70.5
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 5.7e-143 511.5 384 71.9
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 4.8e-142 508.4 391 71.1
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 6.9e-141 504.6 444 62.8
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.5e-140 503.4 373 70.8
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 2.0e-140 503.1 382 70.2
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 4.5e-140 501.9 382 69.1
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 5.9e-140 501.5 351 73.8
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 7.7e-140 501.1 400 68.8
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 5.0e-139 498.4 374 71.1
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 6.5e-139 498.0 386 68.1
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 1.2e-137 493.8 351 73.2
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 1.6e-137 493.4 353 73.4
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 3.6e-137 492.3 343 75.5
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 7.9e-137 491.1 352 74.4
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 7.9e-137 491.1 351 74.1
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 1.8e-136 490.0 376 70.2
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 9.7e-135 484.2 311 80.7
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 4.8e-134 481.9 346 74.3
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 3.1e-133 479.2 343 73.2
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 5.3e-133 478.4 382 68.8
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 9.1e-133 477.6 363 71.1
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 9.1e-133 477.6 343 72.9
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 9.1e-133 477.6 353 73.1
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 2.9e-131 472.6 351 68.4
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 2.9e-131 472.6 363 68.3
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.1e-130 470.7 318 75.2
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 2.3e-128 463.0 319 74.0
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 3.9e-128 462.2 296 79.4
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 2.6e-127 459.5 367 68.4
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 4.4e-127 458.8 380 65.5
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.4e-125 453.8 355 68.5
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 7.0e-125 451.4 318 71.1
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 9.4e-122 441.0 326 70.2
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 2.3e-120 436.4 302 75.8
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 2.3e-120 436.4 428 58.9
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 9.8e-111 404.4 285 72.3
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 9.8e-111 404.4 382 59.9
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 3.6e-105 386.0 478 52.1
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 2.8e-102 376.3 319 61.4
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.0e-99 367.9 239 78.7
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 1.8e-96 357.1 382 61.0
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 1.7e-91 340.5 369 59.6
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 1.4e-80 304.3 351 52.7
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 3.1e-80 303.1 446 45.5
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 4.4e-79 299.3 326 47.9
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.2e-78 297.0 201 73.6
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 8.3e-78 295.0 317 49.8
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 4.1e-77 292.7 234 68.4
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 6.6e-75 285.4 327 47.1
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 2.0e-71 273.9 243 56.8
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 4.2e-69 266.2 907 28.7
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.0e-63 247.3 158 78.5
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 2.2e-54 217.2 143 78.3
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 1.8e-51 207.6 128 84.4
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 9.0e-48 195.3 157 68.8
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 6.5e-46 189.1 177 63.3
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 2.1e-41 174.1 117 79.5
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.1e-32 145.2 325 32.6
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 4.1e-24 116.7 82 70.7
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 1.7e-14 84.7 46 87.0
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 1.5e-13 81.6 81 55.6
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 3.2e-13 80.5 48 81.2
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 9.4e-13 79.0 278 29.5
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 9.4e-13 79.0 260 26.9
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 6.1e-12 76.3 49 75.5
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 2.4e-08 64.3 74 51.4
MD05G1159400 Malus domestica HOM05D006407 ORTHO05D008079 6.5e-06 56.2 64 46.9


User provided reference genes

Program Settings