Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.7e-125 453.4 370 100.0
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-120 436.0 370 97.8
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-116 422.5 370 95.1
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-110 403.7 387 85.3
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-109 400.2 370 93.0
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 5.0e-109 398.7 370 92.2
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-107 394.0 370 87.3
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-106 390.6 370 93.0
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 7.5e-105 384.8 370 90.0
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.0e-102 376.7 370 66.2
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 9.8e-97 357.8 368 89.4
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.7e-93 347.1 424 73.3
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.1e-92 344.4 423 73.5
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 4.2e-92 342.4 370 73.2
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.0e-85 321.2 424 70.5
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.9e-85 319.7 423 72.6
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 3.9e-85 319.3 431 69.4
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 5.8e-81 305.4 413 70.7
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.3e-80 304.3 441 63.5
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.1e-76 291.2 439 65.4
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.8e-74 283.9 432 65.5
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.7e-72 276.2 405 66.2
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 7.1e-71 271.9 408 62.7
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-70 271.2 441 64.4
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-70 270.4 442 61.1
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 2.1e-70 270.4 395 67.6
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 7.8e-70 268.5 135 99.3
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.0e-69 268.1 407 66.1
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-69 267.7 136 98.5
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 3.0e-69 266.5 134 99.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 3.0e-69 266.5 367 58.0
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 8.6e-69 265.0 134 99.3
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 7.3e-68 261.9 420 56.0
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.2e-67 261.2 405 63.0
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.1e-66 258.1 425 62.4
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 6.8e-66 255.4 134 95.5
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.5e-65 254.2 425 63.5
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.0e-65 253.8 426 55.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 2.0e-65 253.8 425 60.5
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 2.6e-65 253.4 445 59.1
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 3.4e-65 253.1 425 56.5
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 7.6e-65 251.9 431 57.8
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 7.6e-65 251.9 431 57.5
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 7.6e-65 251.9 391 60.1
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 9.9e-65 251.5 176 77.3
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.3e-64 251.1 427 60.4
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.3e-64 251.1 428 58.4
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.3e-64 251.1 419 62.5
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.7e-64 250.8 126 98.4
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 6.4e-64 248.8 433 61.7
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 8.4e-64 248.4 424 63.2
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.1e-63 248.1 425 58.1
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-63 247.3 172 77.3
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.9e-63 247.3 383 65.3
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.9e-63 247.3 419 59.9
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 2.4e-63 246.9 442 62.0
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 2.4e-63 246.9 434 58.8
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 7.1e-63 245.4 450 57.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 7.1e-63 245.4 450 57.3
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 7.1e-63 245.4 419 61.1
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 9.2e-63 245.0 172 77.3
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.1e-62 243.8 422 61.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 3.5e-62 243.0 416 63.7
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.5e-62 243.0 419 63.2
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.5e-62 243.0 453 56.7
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 3.5e-62 243.0 392 66.3
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 4.6e-62 242.7 172 76.7
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 4.6e-62 242.7 172 76.7
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 4.6e-62 242.7 424 59.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.6e-62 242.7 416 63.9
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 6.0e-62 242.3 443 62.1
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.3e-61 241.1 461 57.7
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 1.3e-61 241.1 416 59.4
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.7e-61 240.7 134 88.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.0e-61 240.0 412 56.1
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 3.9e-61 239.6 418 62.2
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 5.1e-61 239.2 415 62.2
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 5.1e-61 239.2 442 50.2
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 6.6e-61 238.8 134 88.8
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.6e-61 238.8 170 71.8
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 6.6e-61 238.8 455 57.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 6.6e-61 238.8 134 88.1
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.5e-60 237.7 387 63.0
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.5e-60 237.7 134 87.3
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.9e-60 237.3 134 88.8
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.9e-60 237.3 179 69.3
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.9e-60 237.3 134 87.3
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 3.3e-60 236.5 469 53.1
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 3.3e-60 236.5 136 85.3
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.3e-60 236.5 131 88.5
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 3.3e-60 236.5 412 63.6
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.3e-60 236.5 134 86.6
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 3.3e-60 236.5 134 85.8
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 4.3e-60 236.1 434 55.3
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 4.3e-60 236.1 134 85.8
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 4.3e-60 236.1 134 85.8
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 5.6e-60 235.7 421 55.1
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 7.3e-60 235.3 412 64.6
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.6e-59 234.2 134 86.6
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.6e-59 234.2 425 62.1
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.1e-59 233.8 170 70.6
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.8e-59 233.4 397 63.2
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 2.8e-59 233.4 134 84.3
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 3.6e-59 233.0 457 56.9
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.7e-59 232.6 134 85.1
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 6.2e-59 232.3 126 88.9
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.2e-59 232.3 134 87.3
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.2e-59 232.3 134 87.3
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 6.2e-59 232.3 134 85.1
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 6.2e-59 232.3 131 87.0
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 6.2e-59 232.3 405 63.5
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 8.1e-59 231.9 134 84.3
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 8.1e-59 231.9 134 84.3
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 8.1e-59 231.9 450 60.0
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.1e-58 231.5 431 49.0
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 2.4e-58 230.3 127 88.2
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 2.4e-58 230.3 430 58.8
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 3.1e-58 229.9 134 83.6
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 3.1e-58 229.9 127 88.2
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.1e-58 229.9 128 88.3
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 3.1e-58 229.9 132 86.4
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.0e-58 229.6 135 84.4
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 6.8e-58 228.8 127 87.4
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 8.9e-58 228.4 134 83.6
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.5e-57 227.6 127 87.4
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 2.0e-57 227.3 125 87.2
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 2.0e-57 227.3 410 60.5
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.6e-57 226.9 456 48.7
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 3.4e-57 226.5 477 50.3
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 4.4e-57 226.1 425 56.7
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 5.8e-57 225.7 450 58.2
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 9.9e-57 224.9 448 53.8
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.9e-56 223.4 451 50.8
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.1e-55 221.5 366 61.5
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.2e-55 219.9 399 63.4
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 4.2e-55 219.5 459 55.8
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 7.1e-55 218.8 457 57.3
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 6.6e-53 212.2 448 41.7
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 3.3e-52 209.9 134 79.1
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 4.3e-52 209.5 133 78.9
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 9.0e-50 201.8 133 81.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-48 198.0 105 94.3
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.3e-45 188.0 104 89.4
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-41 174.1 391 56.5
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.0e-41 174.1 136 66.2
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-40 171.4 86 100.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.1e-39 168.3 106 80.2
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 9.3e-39 165.2 86 96.5
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 3.9e-37 159.8 136 63.2
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.5e-36 157.1 107 72.0
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 4.3e-36 156.4 79 94.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 9.6e-36 155.2 87 89.7
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.3e-35 154.8 81 91.4
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-35 153.7 90 88.9
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-35 153.7 87 88.5
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 2.8e-35 153.7 91 84.6
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 2.4e-34 150.6 126 63.5
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.5e-33 147.9 387 48.8
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 4.5e-33 146.4 93 83.9
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 4.5e-33 146.4 100 68.0
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.5e-32 142.5 93 76.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 6.7e-29 132.5 70 95.7
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.1e-28 131.7 112 54.5
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-28 129.8 70 94.3
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.1e-26 123.6 70 85.7
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 5.3e-26 122.9 69 91.3
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-23 114.8 58 93.1
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 8.7e-21 105.5 65 80.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 5.3e-18 96.3 56 87.5
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 9.0e-18 95.5 56 83.9
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.9e-16 90.5 326 58.0
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 8.5e-16 89.0 56 80.4
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 4.2e-15 86.7 70 64.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 6.7e-13 79.3 55 72.7
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 2.4e-10 70.9 72 55.6
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 9.1e-10 68.9 364 47.8
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 3.4e-09 67.0 34 91.2
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 4.5e-09 66.6 103 48.5


User provided reference genes

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