Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 4.8e-198 694.5 402 100.0
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 1.0e-195 686.8 402 98.0
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 5.5e-186 654.4 402 91.5
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 1.1e-167 593.6 408 80.9
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 1.3e-163 580.1 411 85.2
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 9.4e-162 573.9 410 74.6
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 6.1e-145 518.1 420 66.0
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 2.7e-140 502.7 422 63.5
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 1.3e-139 500.4 412 63.8
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 1.9e-138 496.5 406 64.0
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 1.3e-126 457.2 412 60.7
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 1.4e-120 437.2 420 56.9
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 5.4e-117 425.2 407 58.0
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 1.6e-108 397.1 408 53.4
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.3e-107 393.3 396 53.3
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.3e-107 393.3 396 53.3
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 5.6e-106 388.7 396 53.0
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 7.3e-106 388.3 404 52.2
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 3.6e-105 386.0 407 51.4
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 6.2e-105 385.2 405 52.1
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.1e-104 384.4 396 52.5
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 3.1e-104 382.9 402 51.7
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 5.3e-104 382.1 399 52.6
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 6.9e-104 381.7 399 51.1
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 6.9e-104 381.7 349 62.5
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 1.2e-103 380.9 409 51.3
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 2.0e-103 380.2 396 51.8
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 2.6e-103 379.8 402 52.0
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 4.5e-103 379.0 415 52.5
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 3.8e-102 375.9 396 50.5
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 8.4e-102 374.8 397 50.9
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 8.4e-102 374.8 397 51.1
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.4e-101 374.0 407 51.6
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 1.9e-101 373.6 414 49.8
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 1.9e-101 373.6 402 49.0
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 5.4e-101 372.1 407 49.4
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 5.4e-101 372.1 399 50.6
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 7.1e-101 371.7 408 51.5
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 9.3e-101 371.3 403 50.1
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 1.2e-100 370.9 403 52.9
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.2e-100 370.9 406 51.0
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 2.1e-100 370.2 408 50.5
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 3.5e-100 369.4 410 50.5
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 6.0e-100 368.6 401 50.1
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 7.9e-100 368.2 398 51.0
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 7.9e-100 368.2 408 50.0
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 1.3e-99 367.5 399 51.6
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 1.3e-99 367.5 400 50.0
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 1.3e-99 367.5 402 50.5
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.8e-99 367.1 396 49.5
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 6.7e-99 365.2 398 50.5
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 6.7e-99 365.2 401 51.6
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 8.7e-99 364.8 396 50.3
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 8.7e-99 364.8 405 50.1
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 1.9e-98 363.6 407 48.2
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 1.9e-98 363.6 402 49.8
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.5e-98 363.2 397 49.9
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 9.6e-98 361.3 398 50.0
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 1.3e-97 360.9 404 49.0
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.6e-97 360.5 404 49.3
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 4.8e-97 359.0 415 49.2
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 8.1e-97 358.2 398 49.2
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 1.1e-96 357.8 399 50.1
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 2.4e-96 356.7 406 51.7
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 3.1e-96 356.3 413 48.2
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 6.9e-96 355.1 414 47.8
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 1.5e-95 354.0 414 48.8
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 1.5e-95 354.0 399 49.6
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 3.4e-95 352.8 397 48.4
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 5.8e-95 352.1 406 48.5
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 1.3e-94 350.9 400 50.5
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 2.9e-94 349.7 414 48.6
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 3.8e-94 349.4 409 48.4
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 1.1e-93 347.8 380 51.3
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 3.2e-93 346.3 400 48.8
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 7.1e-93 345.1 386 51.8
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 1.0e-91 341.3 400 48.5
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 1.8e-91 340.5 404 46.5
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 2.3e-91 340.1 402 46.8
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 3.0e-91 339.7 408 46.8
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 3.0e-91 339.7 400 48.2
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 3.9e-91 339.3 397 50.4
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 3.3e-90 336.3 407 46.9
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 2.1e-89 333.6 408 46.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.1e-89 333.6 393 46.3
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 2.1e-89 333.6 397 46.9
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 6.2e-89 332.0 409 45.2
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.3e-86 324.3 363 49.6
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 1.7e-86 323.9 436 50.2
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 2.2e-86 323.6 401 48.4
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.1e-85 321.2 411 44.5
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 1.2e-84 317.8 400 45.5
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.3e-83 314.3 400 46.5
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 2.5e-82 310.1 385 48.1
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 2.1e-81 307.0 402 48.3
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 1.6e-76 290.8 402 42.8
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 3.6e-76 289.7 402 41.5
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 6.1e-76 288.9 398 45.0
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 7.9e-76 288.5 396 42.2
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.0e-75 288.1 367 44.7
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 3.9e-75 286.2 348 47.1
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 5.1e-75 285.8 372 44.4
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 4.3e-74 282.7 395 42.3
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 5.7e-74 282.3 349 48.4
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 2.8e-73 280.0 393 40.2
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 1.8e-72 277.3 396 40.2
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 3.1e-72 276.6 398 43.0
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 3.1e-72 276.6 398 43.0
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 8.5e-70 268.5 492 40.0
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.1e-69 268.1 406 39.7
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 1.4e-67 261.2 400 39.2
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.8e-67 260.8 340 45.9
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 2.0e-66 257.3 400 38.5
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 3.3e-66 256.5 427 37.0
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 1.8e-64 250.8 420 36.4
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 2.9e-62 243.4 409 40.6
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 2.1e-60 237.3 425 34.4
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 2.7e-60 236.9 142 76.1
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 8.8e-59 231.9 396 34.8
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 3.7e-57 226.5 402 34.8
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 1.0e-54 218.4 393 34.6
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 5.0e-54 216.1 402 33.8
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 2.7e-52 210.3 400 33.8
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 6.1e-52 209.1 146 64.4
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 6.1e-52 209.1 146 64.4
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 1.7e-49 201.1 394 32.0
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 4.5e-47 193.0 431 32.3
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 7.7e-39 165.6 282 40.1
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 4.7e-36 156.4 123 61.8
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 2.3e-35 154.1 273 38.1
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 1.2e-34 151.8 101 68.3
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 9.5e-29 132.1 129 49.6
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 3.2e-16 90.5 89 52.8
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.9e-13 81.3 166 36.1
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 2.8e-12 77.4 60 60.0
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.4e-08 64.3 44 63.6
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 7.8e-07 59.3 63 52.4


User provided reference genes

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