Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 3.6e-135 485.0 250 100.0
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 2.2e-129 465.7 250 95.6
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.1e-127 459.1 250 95.6
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 1.8e-126 456.1 250 95.2
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 7.0e-115 417.5 257 85.6
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 6.6e-113 411.0 257 84.8
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.3e-108 396.7 271 78.6
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 2.1e-103 379.4 270 77.4
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 4.0e-102 375.2 264 78.4
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 8.6e-89 330.9 232 78.0
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 2.1e-79 299.7 207 76.3
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 3.2e-75 285.8 255 62.4
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 6.0e-74 281.6 253 61.7
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 7.9e-74 281.2 241 64.3
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.9e-74 281.2 247 63.6
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.3e-73 280.4 247 63.6
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.3e-73 280.4 254 61.4
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.8e-73 280.0 241 63.9
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-73 279.6 247 64.0
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 3.0e-73 279.3 248 61.7
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.7e-73 277.7 246 62.6
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.1e-72 277.3 241 64.7
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.5e-72 276.9 252 61.9
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.9e-72 276.6 237 65.0
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.5e-72 276.2 244 63.5
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 3.3e-72 275.8 239 62.8
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 4.3e-72 275.4 244 61.9
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.6e-71 273.5 240 63.8
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 2.8e-71 272.7 241 65.1
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.8e-71 272.7 245 62.0
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 3.6e-71 272.3 246 61.8
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 4.8e-71 271.9 237 65.0
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 6.2e-71 271.6 239 63.2
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 6.2e-71 271.6 244 63.9
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.1e-70 270.8 239 63.6
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.4e-70 270.4 242 64.0
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.4e-70 270.4 245 60.8
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.4e-70 270.4 239 62.3
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.8e-70 270.0 239 63.2
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 3.1e-70 269.2 242 61.6
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 3.1e-70 269.2 251 59.4
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 4.0e-70 268.9 242 61.6
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 5.3e-70 268.5 243 64.2
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 5.3e-70 268.5 241 61.8
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.2e-69 267.3 235 62.1
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.5e-69 266.9 239 61.1
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.5e-69 266.9 242 61.6
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 2.0e-69 266.5 239 62.3
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 2.0e-69 266.5 242 62.4
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.0e-69 266.5 235 61.7
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 2.6e-69 266.2 239 60.7
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 2.6e-69 266.2 239 62.8
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 2.6e-69 266.2 239 61.9
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 2.6e-69 266.2 244 61.5
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 4.5e-69 265.4 238 61.8
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 7.6e-69 264.6 243 60.5
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.3e-68 263.8 241 61.8
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.3e-68 263.8 244 60.7
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 1.3e-68 263.8 238 62.6
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 2.9e-68 262.7 241 61.4
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 2.9e-68 262.7 242 60.3
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 3.8e-68 262.3 242 60.3
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 3.8e-68 262.3 241 61.0
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 6.4e-68 261.5 246 59.8
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 8.4e-68 261.2 250 58.8
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.1e-67 260.8 253 59.3
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 1.9e-67 260.0 230 65.2
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 2.4e-67 259.6 255 58.0
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.2e-67 259.2 239 59.8
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 7.1e-67 258.1 236 63.1
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.6e-66 256.9 223 65.0
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 1.6e-66 256.9 242 61.2
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.1e-66 256.5 234 61.1
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 6.0e-66 255.0 249 60.2
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.8e-65 253.4 209 66.0
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 2.3e-65 253.1 203 66.0
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 2.3e-65 253.1 244 57.4
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 3.0e-65 252.7 249 59.8
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 3.0e-65 252.7 224 61.2
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 8.7e-65 251.1 229 60.7
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 8.7e-65 251.1 226 62.4
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 2.1e-63 246.5 243 58.0
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.8e-62 243.4 226 60.6
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.4e-62 243.0 211 61.6
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 3.1e-62 242.7 244 57.8
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 3.1e-62 242.7 244 57.8
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 5.3e-62 241.9 226 60.6
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 5.8e-61 238.4 198 66.2
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 5.8e-61 238.4 234 56.4
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 5.8e-61 238.4 207 61.8
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 4.9e-60 235.3 178 70.2
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 7.1e-59 231.5 239 55.6
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 3.0e-57 226.1 208 59.6
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 8.2e-55 218.0 152 72.4
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.8e-54 216.9 204 58.3
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 1.1e-46 191.0 236 50.4
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.6e-45 186.4 241 47.3
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 6.5e-44 181.8 239 47.3
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 1.1e-43 181.0 202 52.5
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 3.7e-39 166.0 227 44.1
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 1.1e-38 164.5 189 50.3
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 9.1e-38 161.4 155 54.8
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.5e-37 160.6 155 56.1
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.8e-36 156.0 231 45.0
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 5.0e-36 155.6 220 45.9
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 3.2e-35 152.9 171 55.0
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 9.4e-35 151.4 112 67.9
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 3.9e-33 146.0 153 49.7
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.3e-32 142.9 95 75.8
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 1.8e-25 120.6 155 49.0
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 7.7e-21 105.1 162 42.0
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.2e-19 99.8 130 40.8
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 3.0e-17 93.2 90 54.4
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 7.0e-14 82.0 217 31.3
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 6.1e-10 68.9 125 36.0
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 1.3e-07 61.2 40 72.5


User provided reference genes

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