Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 6.8e-87 323.9 160 100.0
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 3.7e-85 318.2 160 97.5
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 5.9e-83 310.8 163 95.7
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 5.9e-83 310.8 163 95.7
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 5.5e-81 304.3 163 95.1
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 2.8e-80 302.0 160 95.0
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 5.7e-78 294.3 160 91.9
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 3.5e-75 285.0 160 89.4
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 2.9e-74 282.0 160 88.1
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 1.2e-72 276.6 160 85.6
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 2.8e-72 275.4 160 88.1
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 8.9e-71 270.4 156 85.9
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.6e-70 268.9 160 85.0
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 4.6e-67 258.1 158 80.4
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 2.2e-61 239.2 159 76.1
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 7.8e-59 230.7 152 73.0
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 1.5e-57 226.5 158 70.9
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 7.3e-57 224.2 156 68.6
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 7.3e-57 224.2 157 71.3
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 9.5e-57 223.8 156 69.2
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 2.8e-56 222.2 153 69.3
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 4.7e-56 221.5 160 70.6
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 8.1e-56 220.7 155 68.4
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 1.1e-55 220.3 155 68.4
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 1.1e-55 220.3 155 70.3
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 5.2e-55 218.0 159 71.7
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 6.8e-55 217.6 149 70.5
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 2.0e-54 216.1 159 71.1
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 2.6e-54 215.7 159 69.2
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 3.4e-54 215.3 154 70.1
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 4.4e-54 214.9 154 70.1
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 4.4e-54 214.9 158 67.1
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 7.5e-54 214.2 156 67.3
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 2.2e-53 212.6 156 67.3
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 2.2e-53 212.6 150 70.0
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.2e-53 212.6 150 68.0
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.9e-53 212.2 157 70.7
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 2.9e-53 212.2 157 70.7
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 3.7e-53 211.8 156 66.7
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 4.9e-53 211.5 148 71.6
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 4.9e-53 211.5 152 68.4
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 6.4e-53 211.1 153 68.6
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 6.4e-53 211.1 150 70.0
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 6.4e-53 211.1 152 70.4
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 1.1e-52 210.3 165 63.0
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 1.4e-52 209.9 159 67.3
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 1.4e-52 209.9 152 68.4
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 1.4e-52 209.9 152 67.1
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.9e-52 209.5 150 68.0
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 3.2e-52 208.8 150 68.0
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 4.1e-52 208.4 152 65.8
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 5.4e-52 208.0 159 66.7
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 5.4e-52 208.0 160 68.1
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 5.4e-52 208.0 142 73.2
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 5.4e-52 208.0 150 68.0
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 7.1e-52 207.6 150 68.7
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 9.2e-52 207.2 156 63.5
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 1.6e-51 206.5 158 67.1
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 2.1e-51 206.1 155 65.8
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 3.5e-51 205.3 157 66.9
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.5e-51 205.3 153 65.4
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 3.5e-51 205.3 150 66.0
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 3.5e-51 205.3 157 65.6
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 6.0e-51 204.5 153 64.7
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.0e-50 203.8 109 94.5
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.3e-50 203.4 172 60.5
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 1.7e-50 203.0 157 61.8
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 1.7e-50 203.0 150 68.0
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 2.3e-50 202.6 152 64.5
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 3.0e-50 202.2 150 67.3
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 3.0e-50 202.2 149 65.8
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 5.1e-50 201.4 151 64.9
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 5.1e-50 201.4 152 67.8
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 6.6e-50 201.1 149 68.5
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 6.6e-50 201.1 151 64.2
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 1.1e-49 200.3 151 64.9
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 1.1e-49 200.3 150 64.0
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.5e-49 199.9 151 64.2
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 1.5e-49 199.9 108 92.6
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 2.5e-49 199.1 150 65.3
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 3.3e-49 198.7 152 66.4
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 1.6e-48 196.4 150 64.7
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 3.6e-48 195.3 157 63.1
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 1.1e-47 193.7 139 68.3
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 1.4e-47 193.4 154 62.3
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 1.8e-47 193.0 146 65.1
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 4.0e-47 191.8 157 62.4
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 2.6e-46 189.1 155 60.6
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 9.9e-46 187.2 137 65.0
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 8.4e-45 184.1 175 56.0
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.1e-44 183.7 158 62.0
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 1.4e-44 183.3 150 60.0
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 3.2e-44 182.2 132 67.4
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 6.0e-43 177.9 145 62.8
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.3e-41 172.2 135 62.2
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 3.3e-41 172.2 139 61.9
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 4.3e-41 171.8 153 56.9
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 9.6e-41 170.6 152 56.6
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 5.3e-39 164.9 139 61.2
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 4.6e-35 151.8 150 57.3
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 1.3e-34 150.2 164 50.6
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 2.1e-32 142.9 93 73.1
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 9.9e-30 134.0 100 66.0
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 1.1e-28 130.6 148 49.3
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 1.9e-28 129.8 91 69.2
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.8e-23 113.2 78 66.7
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 1.8e-23 113.2 91 62.6
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 1.8e-23 113.2 91 62.6
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 6.9e-23 111.3 69 72.5
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 1.9e-20 103.2 80 61.2
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 7.1e-20 101.3 97 56.7
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 4.6e-19 98.6 80 62.5
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 1.4e-15 87.0 63 65.1
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.6e-14 82.8 70 58.6
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 2.6e-14 82.8 101 46.5
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 6.1e-11 71.6 48 62.5
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 1.1e-09 67.4 79 48.1
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 1.5e-06 57.0 146 32.2


User provided reference genes

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