Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42238 Brassica carinata HOM05D006713 ORTHO05D008601 3.5e-230 801.2 389 100.0
BolC8t52795H Brassica oleracea HOM05D006713 ORTHO05D008601 3.5e-230 801.2 389 100.0
C08p52690 Brassica napus HOM05D006713 ORTHO05D008601 2.8e-227 791.6 389 99.0
A09p68250 Brassica napus HOM05D006713 ORTHO05D008601 7.6e-217 756.9 389 95.6
BraA09t42160Z Brassica rapa HOM05D006713 ORTHO05D008601 1.7e-216 755.7 389 95.6
BcaC07g42233 Brassica carinata HOM05D006713 ORTHO05D008601 8.7e-205 716.8 389 92.5
Thhalv10007899m.g Eutrema salsugineum HOM05D006713 ORTHO05D008601 4.6e-198 694.5 387 87.3
Sp1g02570 Schrenkiella parvula HOM05D006713 ORTHO05D008601 1.4e-194 682.9 389 86.6
AL1G13180 Arabidopsis lyrata HOM05D006713 ORTHO05D008601 1.8e-189 666.0 389 83.5
CARHR003020 Cardamine hirsuta HOM05D006713 ORTHO05D008601 3.1e-186 655.2 389 83.8
AT1G03687 Arabidopsis thaliana HOM05D006713 ORTHO05D008601 5.9e-185 651.0 389 81.7
Carub.0001s0279 Capsella rubella HOM05D006713 ORTHO05D008601 2.0e-180 636.0 351 85.5
Aa31LG1G20990 Aethionema arabicum HOM05D006713 ORTHO05D008601 5.3e-178 627.9 390 80.0
THA.LOC104815960 Tarenaya hassleriana HOM05D006713 ORTHO05D008601 2.3e-165 585.9 387 73.6
Atru.chr6.3001 Acer truncatum HOM05D006713 ORTHO05D008601 3.5e-145 518.8 383 67.1
QL02p049491 Quercus lobata HOM05D006713 ORTHO05D008601 3.7e-139 498.8 335 69.6
QL08p038662 Quercus lobata HOM05D006713 ORTHO05D008601 3.7e-139 498.8 335 69.6
Ciclev10015547m.g Citrus clementina HOM05D006713 ORTHO05D008601 2.0e-137 493.0 349 65.9
RcHm_v2.0_Chr2g0126401 Rosa chinensis HOM05D006713 ORTHO05D008601 1.3e-136 490.3 384 62.5
CSS0037354 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 2.3e-136 489.6 355 67.9
Gohir.A03G157000 Gossypium hirsutum HOM05D006713 ORTHO05D008601 8.6e-136 487.6 387 62.3
Eucgr.A01814 Eucalyptus grandis HOM05D006713 ORTHO05D008601 7.3e-135 484.6 335 67.8
Gohir.D02G180200 Gossypium hirsutum HOM05D006713 ORTHO05D008601 1.2e-134 483.8 355 65.1
Gorai.005G201900 Gossypium raimondii HOM05D006713 ORTHO05D008601 3.6e-134 482.3 355 64.8
Duzib052G0863 Durio zibethinus HOM05D006713 ORTHO05D008601 4.7e-134 481.9 332 68.4
Nn1g06572 Nelumbo nucifera HOM05D006713 ORTHO05D008601 4.7e-134 481.9 385 62.3
TAR235G0002 Trochodendron aralioides HOM05D006713 ORTHO05D008601 3.1e-133 479.2 378 61.9
FAN05G2673 Fragaria x ananassa HOM05D006713 ORTHO05D008601 6.8e-133 478.0 389 61.4
arahy.Tifrunner.gnm1.ann1.FW5TAU Arachis hypogaea HOM05D006713 ORTHO05D008601 8.9e-133 477.6 330 69.1
Glyma.13G297500 Glycine max HOM05D006713 ORTHO05D008601 1.5e-132 476.9 329 69.6
arahy.Tifrunner.gnm1.ann1.Q4ZJSX Arachis hypogaea HOM05D006713 ORTHO05D008601 3.4e-132 475.7 330 69.1
FvH4_6g26190 Fragaria vesca HOM05D006713 ORTHO05D008601 9.8e-132 474.2 389 61.7
GSVIVG01020539001 Vitis vinifera HOM05D006713 ORTHO05D008601 9.8e-132 474.2 345 66.7
MD17G1241000 Malus domestica HOM05D006713 ORTHO05D008601 2.9e-131 472.6 390 60.5
Cpa.g.sc34.156 Carica papaya HOM05D006713 ORTHO05D008601 1.1e-130 470.7 312 70.2
TWI18G1058 Tripterygium wilfordii HOM05D006713 ORTHO05D008601 1.1e-130 470.7 381 60.4
FAN09G0901 Fragaria x ananassa HOM05D006713 ORTHO05D008601 3.2e-130 469.2 383 61.4
Potri.013G132100 Populus trichocarpa HOM05D006713 ORTHO05D008601 1.6e-129 466.8 338 66.6
Lalb_Chr14g0366891 Lupinus albus HOM05D006713 ORTHO05D008601 2.1e-129 466.5 333 67.3
VMungo1080G0618 Vigna mungo HOM05D006713 ORTHO05D008601 2.1e-129 466.5 329 69.0
Dinv26425 Davidia involucrata HOM05D006713 ORTHO05D008601 7.8e-129 464.5 354 65.3
Rhsim06G0143600 Rhododendron simsii HOM05D006713 ORTHO05D008601 2.3e-128 463.0 347 65.1
Sabra13G0111600 Salix brachista HOM05D006713 ORTHO05D008601 2.3e-128 463.0 374 61.8
Lj3g0026133 Lotus japonicus HOM05D006713 ORTHO05D008601 2.5e-127 459.5 380 61.1
MBI06_g06484_MAGBIO Magnolia biondii HOM05D006713 ORTHO05D008601 3.3e-127 459.1 351 64.1
FAN02G3934 Fragaria x ananassa HOM05D006713 ORTHO05D008601 4.3e-127 458.8 365 61.9
Psat5g271440 Pisum sativum HOM05D006713 ORTHO05D008601 5.6e-127 458.4 338 66.6
Sc21g0002760 Simmondsia chinensis HOM05D006713 ORTHO05D008601 7.3e-127 458.0 332 63.6
Actinidia09856 Actinidia chinensis HOM05D006713 ORTHO05D008601 3.6e-126 455.7 334 66.2
HanXRQChr17g0556501 Helianthus annuus HOM05D006713 ORTHO05D008601 6.2e-126 454.9 333 65.5
Medtr2g090335 Medicago truncatula HOM05D006713 ORTHO05D008601 8.1e-126 454.5 327 66.7
Hma1.2p1_1201F.1_g266570 Hydrangea macrophylla HOM05D006713 ORTHO05D008601 2.3e-125 453.0 378 60.1
Lsat_1_v5_gn_8_133201 Lactuca sativa HOM05D006713 ORTHO05D008601 5.2e-125 451.8 330 65.8
CANSAT78G0617 Cannabis sativa HOM05D006713 ORTHO05D008601 8.9e-125 451.1 386 58.5
vmacro12297 Vaccinium macrocarpon HOM05D006713 ORTHO05D008601 8.9e-125 451.1 345 64.6
Ah.01g015180 Amaranthus hybridus HOM05D006713 ORTHO05D008601 2.6e-124 449.5 329 65.0
CsaV3_6G012990 Cucumis sativus L. HOM05D006713 ORTHO05D008601 2.6e-124 449.5 376 59.6
Aqoxy1G02470 Aquilegia oxysepala HOM05D006713 ORTHO05D008601 1.3e-123 447.2 356 61.5
ECA234G3347 Erigeron canadensis HOM05D006713 ORTHO05D008601 1.3e-123 447.2 333 64.3
Migut.H01188 Erythranthe guttata HOM05D006713 ORTHO05D008601 1.7e-123 446.8 331 63.1
EL10Ac9g20760 Beta vulgaris HOM05D006713 ORTHO05D008601 1.9e-122 443.4 432 51.9
MSTRG.12823 Avicennia marina HOM05D006713 ORTHO05D008601 3.2e-122 442.6 331 63.1
DCAR_021241 Daucus carota HOM05D006713 ORTHO05D008601 1.2e-121 440.7 348 62.1
CDE10G0241 Ceratophyllum demersum HOM05D006713 ORTHO05D008601 1.6e-121 440.3 344 62.2
Peaxi162Scf00132g00240 Petunia axillaris HOM05D006713 ORTHO05D008601 1.6e-121 440.3 333 62.8
Solyc07g054070.4 Solanum lycopersicum HOM05D006713 ORTHO05D008601 4.6e-121 438.7 334 62.3
CAN.G248.32 Capsicum annuum HOM05D006713 ORTHO05D008601 6.6e-120 434.9 329 61.7
PGSC0003DMG400018345 Solanum tuberosum HOM05D006713 ORTHO05D008601 1.9e-119 433.3 350 60.0
Cc05_g07100 Coffea canephora HOM05D006713 ORTHO05D008601 2.1e-118 429.9 337 60.5
Hund01101 Selenicereus undatus HOM05D006713 ORTHO05D008601 2.4e-117 426.4 400 53.2
AUR62038189 Chenopodium quinoa HOM05D006713 ORTHO05D008601 3.4e-116 422.5 370 57.3
Zm00001eb273220 Zea mays HOM05D006713 ORTHO05D008601 4.9e-115 418.7 335 59.1
ATR0665G517 Amborella trichopoda HOM05D006713 ORTHO05D008601 1.7e-112 410.2 326 60.7
HPP92_023829 Vanilla planifolia HOM05D006713 ORTHO05D008601 5.6e-111 405.2 342 58.2
HPP92_023892 Vanilla planifolia HOM05D006713 ORTHO05D008601 8.1e-110 401.4 343 57.7
Lj8A113G48 Lonicera japonica HOM05D006713 ORTHO05D008601 2.4e-109 399.8 378 52.6
Haze_13156 Corylus avellana HOM05D006713 ORTHO05D008601 6.0e-105 385.2 342 56.1
Prupe.3G137200 Prunus persica HOM05D006713 ORTHO05D008601 6.0e-105 385.2 377 52.3
PSO675G6747 Papaver somniferum HOM05D006713 ORTHO05D008601 3.0e-104 382.9 371 54.7
PSO541G1719 Papaver somniferum HOM05D006713 ORTHO05D008601 3.9e-104 382.5 380 53.4
Ca_01502_v3 Cicer arietinum L. HOM05D006713 ORTHO05D008601 4.3e-103 379.0 337 58.2
CSS0039998 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 1.1e-101 374.4 285 63.9
Phvul.005G104000 Phaseolus vulgaris HOM05D006713 ORTHO05D008601 1.8e-101 373.6 264 66.3
Manes.12G089598 Manihot esculenta HOM05D006713 ORTHO05D008601 3.1e-101 372.9 311 58.8
ClCG02G017610 Citrullus lanatus HOM05D006713 ORTHO05D008601 9.0e-101 371.3 536 41.4
Nitab4.5_0000512g0100 Nicotiana tabacum HOM05D006713 ORTHO05D008601 3.2e-98 362.8 366 52.7
Nitab4.5_0002169g0110 Nicotiana tabacum HOM05D006713 ORTHO05D008601 3.2e-98 362.8 381 52.8
unitig_62.g23167 Utricularia gibba HOM05D006713 ORTHO05D008601 1.5e-95 354.0 276 61.6
Thecc.02G179100 Theobroma cacao HOM05D006713 ORTHO05D008601 3.7e-94 349.4 242 66.1
Sopen07g028010 Solanum pennellii HOM05D006713 ORTHO05D008601 1.8e-93 347.1 263 60.5
AUR62038063 Chenopodium quinoa HOM05D006713 ORTHO05D008601 3.4e-92 342.8 361 50.7
AagrBONN_evm.TU.Sc2ySwM_117.1346 Anthoceros agrestis HOM05D006713 ORTHO05D008601 6.0e-89 332.0 321 52.3
CiPaw.03G176500 Carya illinoinensis HOM05D006713 ORTHO05D008601 2.5e-87 326.6 261 59.4
Sed0026559 Sechium edule HOM05D006713 ORTHO05D008601 7.6e-84 315.1 281 55.9
Mapoly0088s0019 Marchantia polymorpha HOM05D006713 ORTHO05D008601 7.9e-81 305.1 337 45.4
Os06g0342750 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 1.8e-77 293.9 235 57.9
SGA_v2.0_scaffold109G31136 Striga asiatica HOM05D006713 ORTHO05D007323 4.1e-77 292.7 379 44.1
MELO3C013617.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.2e-76 291.2 333 47.1
Glyma.12G203966 Glycine max HOM05D006713 ORTHO05D008601 1.8e-69 267.3 166 71.1
SalBow1G6029 Salvia bowleyana HOM05D006713 ORTHO05D008601 6.9e-69 265.4 172 66.3
SMO117G0197 Selaginella moellendorffii HOM05D006713 ORTHO05D008601 2.2e-67 260.4 324 43.2
CBR_g35040 Chara braunii HOM05D006713 ORTHO05D008601 1.8e-61 240.7 351 39.0
Glyma.12G204032 Glycine max HOM05D006713 ORTHO05D008601 8.3e-38 162.2 102 77.5
SalBow1G1793 Salvia bowleyana HOM05D006713 ORTHO05D008601 1.6e-36 157.9 144 52.1
Os06g0343000 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 8.6e-27 125.6 98 63.3
MELO3C001128.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.5e-26 124.8 78 70.5
MELO3C013610.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.5e-18 98.2 75 66.7
SEGI_39135 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 8.9e-16 89.0 97 46.4
Oeu023431.1 Olea europaea HOM05D006713 ORTHO05D008601 8.6e-11 72.4 59 62.7
MELO3C013612.2 Cucumis melo HOM05D006713 ORTHO05D008601 2.1e-09 67.8 47 59.6
MELO3C035062.2 Cucumis melo HOM05D006713 ORTHO05D008601 8.9e-08 62.4 39 66.7
Oeu045818.1 Olea europaea HOM05D006713 ORTHO05D008601 6.4e-06 56.2 50 44.0


User provided reference genes

Program Settings