Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 5.3e-218 760.8 389 100.0
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 3.4e-209 731.5 389 96.4
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 1.2e-190 669.8 389 89.2
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 9.7e-188 660.2 389 87.1
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 1.8e-186 656.0 389 86.4
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 1.8e-181 639.4 387 82.9
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 7.4e-180 634.0 389 83.8
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 2.9e-176 622.1 389 82.5
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 4.2e-175 618.2 400 81.2
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 4.7e-174 614.8 389 82.3
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 8.8e-173 610.5 389 81.2
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 6.3e-171 604.4 389 79.9
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 9.1e-170 600.5 385 78.7
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 4.4e-148 528.5 385 70.1
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 5.0e-136 488.4 391 63.7
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 2.1e-134 483.0 388 65.2
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 3.6e-134 482.3 388 63.9
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 1.8e-133 479.9 389 63.8
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 4.0e-133 478.8 387 63.6
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 1.5e-132 476.9 388 63.7
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 2.6e-132 476.1 388 62.9
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.7e-131 473.4 390 62.8
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 3.7e-131 472.2 387 62.8
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.4e-130 470.3 390 62.3
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 1.4e-130 470.3 390 62.6
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 3.2e-130 469.2 391 62.4
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 3.2e-130 469.2 387 62.8
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 9.2e-130 467.6 387 61.5
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 1.2e-129 467.2 387 60.2
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.6e-129 466.8 390 63.6
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 1.6e-129 466.8 391 62.1
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 2.1e-129 466.5 391 61.9
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.7e-129 466.1 389 60.7
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 6.0e-129 464.9 388 63.1
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 1.3e-128 463.8 389 61.4
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 1.7e-128 463.4 390 61.8
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 1.7e-128 463.4 389 61.7
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 5.1e-128 461.8 387 61.2
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 1.9e-127 459.9 388 62.4
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 5.6e-127 458.4 389 61.2
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 5.6e-127 458.4 388 61.3
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 7.3e-127 458.0 389 59.4
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 1.2e-126 457.2 391 60.6
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 2.1e-126 456.4 388 61.1
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 2.8e-126 456.1 387 59.7
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 8.1e-126 454.5 389 60.4
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 1.4e-125 453.8 392 62.2
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 2.3e-125 453.0 391 60.4
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 4.0e-125 452.2 387 61.2
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 8.9e-125 451.1 386 60.6
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 1.2e-124 450.7 389 57.8
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.2e-124 450.7 387 60.5
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 2.6e-124 449.5 432 58.3
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 4.4e-124 448.7 388 60.8
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 1.7e-123 446.8 387 60.2
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 3.7e-123 445.7 390 59.2
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 4.9e-123 445.3 387 59.7
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 3.2e-122 442.6 389 60.2
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 2.7e-121 439.5 366 64.2
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 3.0e-120 436.0 391 58.3
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 5.1e-120 435.3 387 58.4
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 8.6e-120 434.5 391 58.3
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.5e-119 433.7 355 64.5
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 1.5e-119 433.7 393 59.0
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 4.3e-119 432.2 391 57.8
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 6.2e-118 428.3 391 57.8
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 6.2e-118 428.3 386 57.8
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 1.5e-116 423.7 388 58.8
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 7.6e-116 421.4 393 58.8
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 9.9e-116 421.0 388 57.7
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 9.3e-114 414.5 392 56.9
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.3e-112 410.6 388 57.5
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.1e-111 407.5 376 56.1
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 9.0e-109 397.9 389 54.2
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 9.9e-108 394.4 374 57.5
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.2e-106 389.0 404 52.7
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 2.7e-105 386.3 399 51.1
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 3.5e-105 386.0 388 53.9
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 6.0e-105 385.2 389 50.6
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 4.8e-102 375.6 352 54.5
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 8.4e-99 364.8 379 54.1
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 7.1e-98 361.7 354 53.7
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 1.3e-96 357.5 369 53.7
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 8.7e-96 354.8 241 73.4
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.5e-95 354.0 388 51.5
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 3.3e-95 352.8 389 51.2
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 5.8e-92 342.0 387 48.6
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 4.9e-91 339.0 240 69.6
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.1e-89 333.6 243 70.4
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 3.0e-88 329.7 248 65.7
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 6.7e-88 328.6 240 69.2
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 1.1e-87 327.8 240 70.0
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 2.5e-87 326.6 240 68.8
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 8.2e-86 321.6 240 68.3
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 1.8e-80 303.9 394 44.4
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 9.7e-79 298.1 221 69.2
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 3.1e-77 293.1 388 43.6
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 3.4e-76 289.7 295 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 1.7e-75 287.3 323 47.4
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.7e-75 287.3 244 60.7
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 3.2e-74 283.1 387 43.9
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 2.4e-69 266.9 387 43.7
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 4.2e-58 229.6 332 42.8
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.1e-53 214.9 328 39.0
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.0e-51 206.1 393 36.1
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 1.6e-49 201.1 289 39.8
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 3.5e-36 156.8 394 29.9
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 4.5e-36 156.4 129 58.1
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 2.3e-35 154.1 106 72.6
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 6.6e-35 152.5 391 30.4
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 1.9e-34 151.0 127 56.7
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.2e-33 148.3 129 54.3
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 1.6e-33 147.9 334 29.9
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 2.6e-31 140.6 127 56.7
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 1.3e-30 138.3 90 76.7
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 1.7e-30 137.9 126 51.6
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 4.4e-23 113.2 189 38.6
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 1.2e-20 105.1 98 56.1
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.9e-19 100.1 105 49.5
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.1e-18 98.6 106 50.9
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 2.2e-14 84.3 87 48.3
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.7e-11 74.7 66 50.0
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 2.3e-11 74.3 234 30.3
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.1e-10 72.0 96 40.6
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.1e-10 72.0 60 60.0
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 3.6e-09 67.0 145 31.7
Mapoly0087s0002 Marchantia polymorpha HOM05D003388 ORTHO05D003616 6.8e-08 62.8 128 32.8
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 7.6e-07 59.3 147 34.0
Peaxi162Scf00533g00068 Petunia axillaris HOM05D001789 ORTHO05D001755 1.7e-06 58.2 141 32.6
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 2.2e-06 57.8 159 30.8
Oeu058962.1 Olea europaea HOM05D006451 ORTHO05D007680 2.2e-06 57.8 143 32.2
SGA_v2.0_scaffold191G40453 Striga asiatica HOM05D006451 ORTHO05D007680 2.2e-06 57.8 152 30.9
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 2.9e-06 57.4 129 34.1
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 8.4e-06 55.8 141 31.9
THA.LOC104817287 Tarenaya hassleriana HOM05D002345 ORTHO05D002391 8.4e-06 55.8 168 30.4


User provided reference genes

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