Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 7.5e-98 360.5 183 100.0
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 9.1e-96 353.6 181 98.9
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 9.5e-53 210.7 187 59.4
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 2.4e-51 206.1 175 63.4
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.7e-49 199.9 167 62.9
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 2.2e-49 199.5 167 62.9
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 1.4e-48 196.8 179 60.9
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.4e-48 196.1 182 58.8
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 3.2e-48 195.7 197 56.3
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 1.7e-46 189.9 162 60.5
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 2.5e-45 186.0 165 60.6
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 3.1e-43 179.1 164 60.4
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 7.6e-42 174.5 175 55.4
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 4.2e-32 142.1 135 54.8
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 2.7e-31 139.4 127 53.5
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 5.6e-21 105.1 151 41.1
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 5.6e-21 105.1 151 40.4
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 7.4e-21 104.8 152 40.1
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.6e-20 103.6 151 41.1
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 8.2e-20 101.3 157 39.5
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.4e-19 99.8 170 38.2
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.4e-19 99.8 155 37.4
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 5.3e-19 98.6 154 38.3
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 5.3e-19 98.6 158 37.3
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.2e-18 97.4 159 37.7
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.2e-18 97.4 184 32.1
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.5e-18 97.1 119 42.0
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 2.6e-18 96.3 157 38.9
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 7.6e-18 94.7 127 41.7
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.0e-17 94.4 114 40.4
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.7e-17 93.6 127 40.9
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.9e-17 92.8 153 37.9
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 4.9e-17 92.0 137 40.1
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 6.5e-17 91.7 127 40.9
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 6.5e-17 91.7 151 35.8
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.4e-16 90.5 137 40.1
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.4e-16 90.5 172 34.3
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 3.2e-16 89.4 158 36.1
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 5.5e-16 88.6 158 34.8
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 7.1e-16 88.2 125 41.6
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.2e-15 87.4 110 41.8
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.2e-15 87.4 129 41.1
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 1.2e-15 87.4 189 35.4
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.1e-15 86.7 167 34.1
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 2.1e-15 86.7 127 39.4
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 2.7e-15 86.3 131 39.7
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 3.5e-15 85.9 139 36.7
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 4.6e-15 85.5 153 35.3
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.3e-14 84.0 155 34.8
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 2.3e-14 83.2 131 37.4
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.3e-14 83.2 131 37.4
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.3e-14 83.2 157 33.1
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 8.7e-14 81.3 157 35.7
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.1e-13 80.9 140 37.9
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 2.5e-13 79.7 148 36.5
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 3.3e-13 79.3 148 35.8
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 3.3e-13 79.3 172 29.7
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 9.7e-13 77.8 167 31.7
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.2e-12 76.6 103 39.8
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 4.8e-12 75.5 101 36.6
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 4.8e-12 75.5 135 35.6
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.3e-12 75.1 145 34.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 3.1e-11 72.8 144 34.7
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 4.1e-11 72.4 156 31.4
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 6.9e-11 71.6 160 31.2
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 9.0e-11 71.2 77 49.4
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 1.5e-10 70.5 107 39.3
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.6e-10 69.7 78 44.9
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 4.5e-10 68.9 121 34.7
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 5.9e-10 68.6 63 50.8
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.0e-09 67.8 156 34.0
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.0e-09 67.8 160 30.0
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.0e-09 67.8 80 43.8
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.3e-09 67.4 126 35.7
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.3e-09 67.4 161 28.0
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.3e-09 67.4 154 33.1
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.7e-09 67.0 79 40.5
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 2.2e-09 66.6 121 34.7
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 2.9e-09 66.2 178 30.3
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.8e-09 65.9 134 33.6
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 5.0e-09 65.5 71 42.3
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.4e-08 63.9 81 35.8
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 2.5e-08 63.2 82 40.2
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 2.5e-08 63.2 128 34.4
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 3.2e-08 62.8 72 43.1
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 4.2e-08 62.4 70 40.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 5.5e-08 62.0 84 39.3
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 9.4e-08 61.2 133 35.3
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 9.4e-08 61.2 55 52.7
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.2e-07 60.8 153 24.2
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.1e-07 60.1 71 43.7
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 4.6e-07 58.9 119 30.3
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.8e-06 57.0 103 33.0
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.8e-06 57.0 92 41.3
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 2.3e-06 56.6 96 33.3
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 3.0e-06 56.2 62 43.5
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 3.9e-06 55.8 125 31.2
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 3.9e-06 55.8 70 42.9
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 5.1e-06 55.5 124 32.3
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 8.8e-06 54.7 70 41.4


User provided reference genes

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